debian-med Jun 2020 by subject

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"Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research" Re: [covid-19] Help for ocaml package needed [covid-19] r-bioc-beachmat [covid-19] RFS: scrappie [Help needed] ont-fast5-api [Help Needed] pyranges [Help Needed] unifrac [RFS] beads [RFS] biomaj3-core [RFS] elph [RFS] gatb-core [RFS] libaparapi-java [RFS] libgff [RFS] mencal [RFS] ncls [RFS] ngmlr [RFS] paryfor [RFS] poretools [RFS] pyrle [RFS] readucks [RFS] seq-gen [RFS] seqtools [RFS] shovill [RFS] sickle [RFS] solvate [RFS] sorted-nearest [RFS] streamz [RFS] vsearch [RFS] yanagiba [RFS] yanosim Any idea how to successfully use Debian gtest in assembly-stats? Any idea whether latest version of pbbam is 1.0.7 or rather 1.3.0 (Was: Bug#959643) Any volunteer to spent some time on the new version of artemis (Was: Bug#963430: artemis: FTBFS: /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied) Anybody volunteering to try to save falcon in Debian (Was: Bug#936503: falcon: Python2 removal in sid/bullseye) Re: Bug#962675: can cdbfasta be marked Multi-Arch: foreign? Re: Bug#963052: ITP: pairtools -- Framework to process sequencing data from a Hi-C experiment Bug#963630: ITP: libaparapi-java -- framework for executing native Java code on the GPU Can someone else check and sponsor (Was: nanofilt ready for upload) Can someone look into fixing python script tests in libsonlib? (Was: Re: sonLib_daemonize.py goes missing before build) concurrentqueue on salsa - mostly ready covid-19 sprint result: Debian Med packaging beginners FAQ covtobed upload Creating official Debian package of flappie Re: Debian package bcftools deblur - waiting for updated sortmerna Demoting Recommends in overly large bio task dextractor ready for upload done Re: [RFS] mencal Extended Jun's Table with sheet for microbiome fieldbioinformatics -> python3-artic Re: nf-core-artic Fixed Bug#960760: tree-puzzle FTBFS on !amd64: test failures Flye - ready to upload? Re: graphmap2, gindex, seqlib & some more friends Great! Re: New package vt loocking for a sponsor Hackathon package 'enlighten' package ready for sponsored upload Help for testing iitii needed Help needed: Bug#962292: ITP: flye -- de novo assembler for single molecule sequencing reads using repeat graphs How to direct users to packages in Debian Med Re: Please do not do heavy changes on metapackages without discussion (Was: [Git][blends-team/med][master] Update bio - substituted (most) recommendations with suggestions) How to properly deal with git lfs If you are using Debian Med packages please ask your upstream to mention Debian in install instructions (Was: Upstream CI: send patches to use Debian packages when existing?) intake package for upload Issue about mutual dependencies for aparapi Re: ksw2 library - nobody else at it, right? License of your project ufasta on Github marginPhase illegal instruction (through test and manual invocation of binary marginPhase) Re: mcl_14-137+ds-5_amd64.changes REJECTED mecat2 requires ncbi-blast+ sources (yet ncbi-blast+ is not a library)? Re: mindthegap_2.2.0-1_amd64.changes REJECTED Name space pollution in Bioinformatics: seqlib nanofilt ready for upload Need some help with bbmap New package vt loocking for a sponsor nf-core-artic Parallel packaging attempts Re: Perl issues with ensembl-vep PhyML error - does that ring any bell? Re: RFS: python-biopython plasmidID - ready for peer review Please do not do heavy changes on metapackages without discussion (Was: [Git][blends-team/med][master] Update bio - substituted (most) recommendations with suggestions) Please review the announcement for second Debian Med COVID-19 hackathon pll-modules tests failing pore-c is interesting - git push lfs issue pplacer - and undefined mclgUnionv reference python-biopython test warnings lookup QUAST - builds with cowbuilder, does not test, though Quast test issues solved, needs stripping of minimized JS (Was: QUAST - builds with cowbuilder, does not test, though) Re: raxml-ng dependency not already packaged ready? RFS: r-cran-lsd RFH pychopper - test in cowbuilder does not find tests RFH: NanoSV - pkg_resources.DistributionNotFound: The 'configparser' distribution was not found and is required by NanoSV RFH: vienna-rna - Pushed changes back for you all to inspect RFS: bppsuite RFS: cluster3 RFS: concurrentqueue feels ready to upload RFS: drop-seq RFS: flash Re: RFS: freebayes RFS: indelible RFS: insilicoseq [ITP] RFS: ivar RFS: mapsembler2 RFS: nanook RFS: ncbi-acc-download [ITP] RFS: norsp RFS: pilon RFS: prinseq-lite: prinseq-graphs with PCA support RFS: python-biopython RFS: readerwriterqueue RFS: seer RFS: seirsplus [ITP] RFS: Statistics::PCA RFS: t-coffee bug #962974 fix RFS: wham-align Second Debian Med COVID-19 hackathon (June 15-21, 2020) sonLib_daemonize.py goes missing before build Re: Sponsored and hints for more targets (Was: RFS pynn: fixed failing autodep8 autopkgtest (#959061)) Re: Statistics::PCA and friends Status of libsonlib Re: Tandem Repeats Finder License Terms Tophat was removed from Debian (Was: [Git][blends-team/med][master] Update bio - added tophat and tophat-recondition) Re: TRF source code and executables Uploaded Re: RFS: flash Uploaded. Re: dextractor ready for upload Upstream CI: send patches to use Debian packages when existing? Re: Videoconference today Friday 2020-06-05 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))) Videoconference today Friday 2020-06-12 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))) Videoconference today Friday 2020-06-26 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))) What is the best way to refresh a 2to3 patch ? What is the relation ncbi-magicblast and magicblast Workflows and their dependencies - Jun's dep spreadsheet - status The last update was on 22:40 GMT Tue Jun 30. There are 396 messages. Page 1 of 1.
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