Re: What is the relation ncbi-magicblast and magicblast

[Andreas Tille <tille@debian.org>]

Hi Aaron,

On Mon, Jun 22, 2020 at 10:53:49AM -0400, Aaron M. Ucko wrote:
> > override_dh_auto_test:
> 
> Oops, I accidentally left the leading - in place and omitted an
> environment variable one or two tests will need to work fully offline;
> please make that
> 
> override_dh_auto_test:
> 	NCBI_CONFIG__GENBANK__PREOPEN=false dh_auto_test || \
> 	    (cd c++/*/build && ./check.sh concat_err && cat check.sh.out_err; \
>             exit 1)

I admit this does not really help against test failures like

OK  --  [serial/datatool] datatool.sh     (real 0.34, user 0.31, sys 0.03)
SKP --  [serial/datatool] datatool_xml.sh
ERR [1] --  [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM     (real 0.04, user 0.03, sys 0.00)
ERR [1] --  [objects/genomecoll/gc_cli] test_gencoll_svc_ASSM_BY_SEQ     (real 0.04, user 0.03, sys 0.00)
ERR [1] --  [objects/genomecoll/gc_cli] test_gencoll_svc_TYPELOC     (real 0.04, user 0.02, sys 0.01)

Succeeded : 1
Timeout   : 0
Failed    : 3
Absent    : 1

As I said in my previous mail I'm also worried about

E: ncbi-magicblast source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson10/license.txt
E: ncbi-magicblast source: license-problem-json-evil c++/include/misc/jsonwrapp/rapidjson11/license.txt
 
Kind regards

        Andreas.


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