Re: Any volunteer to spent some time on the new version of artemis (Was: Bug#963430: artemis: FTBFS: /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied)
On Mon, 2020-06-22 at 10:57 -0300, Emmanuel Arias wrote:
> Hi Andreas,
>
> I would be happy to help on artemis. Obviously I will need
> a more experienced developer helping me. :)
do not hesitate to ask for help on mailing list, I'll keep an eye on
it.
I have very few spare time to manage this for now but will gladly help
if possible.
Olivier
>
> Cheers!
> Emmanuel
>
>
>
>
>
> Cheers,
> Arias Emmanuel
> @eamanu
> yaerobi.com
>
>
> On Mon, Jun 22, 2020 at 9:17 AM Andreas Tille <andreas@an3as.eu>
> wrote:
> > Hi,
> >
> > we are lagging several upstream versions behind due to new
> > dependencies
> > and other build issues. I wonder whether somebody might volunteer
> > to
> > update artemis. It would be great to get the latest version at
> > least
> > before the freeze starts. While this takes some time I guess
> > having
> > latest artemis is time consuming as well - thus I'm asking here.
> >
> > Any takers? Despite I'm the only remaining Uploader this exceeds
> > my
> > current time capacity.
> >
> > Kind regards
> >
> > Andreas.
> >
> > On Sun, Jun 21, 2020 at 10:26:05PM +0200, Lucas Nussbaum wrote:
> > > Source: artemis
> > > Version: 17.0.1+dfsg-2
> > > Severity: serious
> > > Justification: FTBFS on amd64
> > > Tags: bullseye sid ftbfs
> > > Usertags: ftbfs-20200620 ftbfs-bullseye
> > >
> > > Hi,
> > >
> > > During a rebuild of all packages in sid, your package failed to
> > build
> > > on amd64.
> > >
> > > Relevant part (hopefully):
> > > > debian/rules build
> > > > dh build --with javahelper
> > > > dh_update_autotools_config
> > > > dh_autoreconf
> > > > dh_auto_configure
> > > > jh_linkjars
> > > > debian/rules override_dh_auto_build
> > > > make[1]: Entering directory '/<<PKGBUILDDIR>>'
> > > > dh_auto_build -- jar
> > > > make -j4 "INSTALL=install --strip-program=true" jar
> > > > make[2]: Entering directory '/<<PKGBUILDDIR>>'
> > > > CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-
> > core.jar /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar
> > /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar
> > /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar
> > /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar
> > /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar
> > /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar
> > /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar
> > /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac
> > -source 1.8 -target 1.8 uk/ac/sanger/artemis/Action.java
> > > > CLASSPATH=/usr/share/java/biojava.jar /usr/share/java/j2ssh-
> > core.jar /usr/share/java/ibatis.jar /usr/share/java/log4j-1.2.jar
> > /usr/share/java/postgresql-jdbc3.jar /usr/share/java/picard.jar
> > /usr/share/java/htsjdk.jar /usr/share/java/commons-net.jar
> > /usr/share/java/commons-lang3.jar /usr/share/java/batik-all.jar
> > /usr/share/java/batik-awt-util.jar /usr/share/java/batik-dom.jar
> > /usr/share/java/batik-ext.jar /usr/share/java/batik-svggen.jar
> > /usr/share/java/batik-util.jar /usr/share/java/batik-xml.jar
> > /usr/share/EMBOSS/jemboss/lib/jemboss.jar /<<PKGBUILDDIR>>: javac
> > -source 1.8 -target 1.8
> > uk/ac/sanger/artemis/ActionController.java
> > > > /bin/sh: 1: /usr/share/java/j2ssh-core.jar: Permission denied
> > > > make[2]: *** [Makefile:48: uk/ac/sanger/artemis/Action.class]
> > Error 126
> > >
> > > The full build log is available from:
> > >
> > http://qa-logs.debian.net/2020/06/20/artemis_17.0.1+dfsg-2_unstable.log
> > >
> > > A list of current common problems and possible solutions is
> > available at
> > > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to
> > contribute!
> > >
> > > About the archive rebuild: The rebuild was done on EC2 VM
> > instances from
> > > Amazon Web Services, using a clean, minimal and up-to-date
> > chroot. Every
> > > failed build was retried once to eliminate random failures.
> > >
> > > _______________________________________________
> > > Debian-med-packaging mailing list
> > > Debian-med-packaging@alioth-lists.debian.net
> > >
> > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging
> >
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
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