Re: Perl issues with ensembl-vep
Hi Étienne,
On Fri, Jun 05, 2020 at 09:27:41PM +0200, Étienne Mollier wrote:
> Hi Andreas,
> > > https://salsa.debian.org/med-team/ensembl-vep/-/blob/master/debian/changelog
> >
> > Sure, let's have a look! :)
>
> Following up on what I mentionned during today's Jitsi meeting,
> just for the record, from the note you left into the changelog:
Ahhhh, I just got ensembl (without -vep). Good you insist here! ;-)
> > 1. Can't locate Bio/EnsEMBL/Registry.pm in @INC (you may need
> > to install the Bio::EnsEMBL::Registry module)
>
> Said module turned out to be available in the EnsEMBL Perl core
> API, which is available on Github:
>
> https://github.com/Ensembl/ensembl/blob/release/100/modules/Bio/EnsEMBL/Registry.pm
> https://github.com/Ensembl/ensembl
>
> and turned out to be quite a challenge to package some time ago:
>
> https://salsa.debian.org/med-team/ensembl/
May be we should just isolate this module somehow. Packaging
whole ensembl seems to much effort.
> I fear I'm short on energy for heavy packaging tasks right at
> the moment, but for the record, so that it's documented somehow.
Thanks a lot also for adding this information to d/changelog.
Kind regards
Andreas.
--
http://fam-tille.de
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