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Re: Perl issues with ensembl-vep



Hi Andreas,

Étienne Mollier, on 2020-05-28 20:35:53 +0200:
> Andreas Tille, on 2020-05-28 11:42:34 +0200:
> > On Thu, May 28, 2020 at 09:56:29AM +0200, Andreas Tille wrote:
> > > I'm currently busy with what
> > > is called vep in this list but addressed by conda as ensembl-vep which
> > > I'll use as package name as well.
> > 
> > I've added ensembl-vep to Salsa[1] but I'd be happy if somebody else
> > could pick up this.  I've added the needed todos in changelog:
> > 
> >    https://salsa.debian.org/med-team/ensembl-vep/-/blob/master/debian/changelog
> 
> Sure, let's have a look!  :)

Following up on what I mentionned during today's Jitsi meeting,
just for the record, from the note you left into the changelog:
> 1. Can't locate Bio/EnsEMBL/Registry.pm in @INC (you may need
> to install the Bio::EnsEMBL::Registry module)

Said module turned out to be available in the EnsEMBL Perl core
API, which is available on Github:

	https://github.com/Ensembl/ensembl/blob/release/100/modules/Bio/EnsEMBL/Registry.pm
	https://github.com/Ensembl/ensembl

and turned out to be quite a challenge to package some time ago:

	https://salsa.debian.org/med-team/ensembl/

I fear I'm short on energy for heavy packaging tasks right at
the moment, but for the record, so that it's documented somehow.

Take care,
-- 
Étienne Mollier <etienne.mollier@mailoo.org>
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