Re: Tophat was removed from Debian (Was: [Git][blends-team/med][master] Update bio - added tophat and tophat-recondition)

[Steffen Möller <steffen_moeller@gmx.de>]

Hi Andreas,

I'll change that to "suggests", then. Personally, I do not see why we
should remove it while it is still compiling. It is outdated - so what.
Some data out there is even older and was analysed with it. Having it in
contributes to the reproducibility of older work, kind of a precondition
to discuss old findings and then perform the reanalysis with modern tools.

Best,

Steffen

On 09.06.20 17:49, Andreas Tille wrote:
> Hi Steffen,
>
> according to
>
>      https://tracker.debian.org/news/1103036/tophat-removed-from-testing/
>
> tophat was removed from Debian.  I was hoping for some answers to
>
>      https://lists.debian.org/debian-med/2019/11/msg00076.html
>
> but waiting for > 3 monthes seemed to be long enough.
>
> Kind regards
>
>        Andreas.
>
> On Mon, Jun 08, 2020 at 10:23:38PM +0000, Steffen Möller wrote:
> > Steffen Möller pushed to branch master at Debian Blends Team / med
> >
> >
> > Commits:
> > 9f36fb44 by Steffen Möller at 2020-06-08T22:23:36+00:00
> > Update bio - added tophat and tophat-recondition
> > - - - - -
> >
> >
> > 1 changed file:
> >
> > - tasks/bio
> >
> >
> > Changes:
> >
> > =====================================
> > tasks/bio
> > =====================================
> > @@ -158,6 +158,9 @@ Suggets: q2-taxa,
> >
> >   Recommends: scoary
> >
> > +Recommends: tophat,
> > +            tophat-recondition
> > +
> >   Recommends: umap
> >
> >   X-End-Category: high-throughput sequencing
> >
> >
> >
> > View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9f36fb4458762e3b4bfff2696c039eb06dc9afe0
> >
> > --
> > View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/9f36fb4458762e3b4bfff2696c039eb06dc9afe0
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