Hi Andreas, Andreas Tille, on 2020-06-17 08:05:57 +0200: > On Tue, Jun 16, 2020 at 10:41:28PM +0200, Étienne Mollier wrote: > > I pushed a little change in the d/control file of the package > > python-biopython in version 1.77+dfsg-2. This was the suggested > > way to address the bug #962944: > > > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962944 > > > > I couldn't reproduce any particular problem with the few last > > rounds of `gbp buildpackage` and `autopkgtest`, and `lintian` > > has nothing outstanding to complain about, so it is ready for > > review. > > I've just uploaded (today the build went smoothly). Thank you for the review and upload. :) > > Unfortunately, the PhyML issue below is left aside for the > > moment. > > As far as I can see this was the urgent issue that was > reflected in a RC bug that should be fixed quickly. Indeed, I thought as well. > > Steffen Möller, on 2020-06-12 19:40:37 +0200: > > > FAIL: test_phyml (test_phyml_tool.AppTests) > > > Run PhyML using the wrapper. > > > ---------------------------------------------------------------------- > > > Traceback (most recent call last): > > > File "/home/moeller/git/med-team/python-biopython/.pybuild/cpython3_3.8/build/Tests/test_phyml_tool.py", > > > line 51, in test_phyml > > > self.assertEqual(len(err), 0) > > > AssertionError: 192 != 0 > > > > It is sad to only have the length of the error message, so I > > tried to get the full error message with a litte patch for > > debug, but have been at loss to reproduce the PhyML issue after > > having reduced my pid_max to not be affected by #962974 anymore; > > I am wondering if the two problems are related somehow, or if I > > just didn't trigger the test in the proper environment. > > > > https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=962974 > > Thanks a lot for your investigation You're welcome. Next in my to do list is to have a deeper look at the whole test suite. I wouldn't be surprised to find a few more warnings in need to be sorted. Will have a look at it this evening UTC+0200. Have a nice day, :) -- Étienne Mollier <etienne.mollier@mailoo.org> Fingerprint: 5ab1 4edf 63bb ccff 8b54 2fa9 59da 56fe fff3 882d Help find cures against the Covid-19 ! Give CPU cycles: * Rosetta@home: https://boinc.bakerlab.org/rosetta/ * Folding@home: https://foldingathome.org/
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