Re: RFS: insilicoseq [ITP]

[Andreas Tille <tille@debian.org>]

Hi Sao,

On Wed, Jun 17, 2020 at 09:11:59PM +0900, Sao I Kuan wrote:
> > ----------------------------------------------------------------------
> > Traceback (most recent call last):
> >   File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest
> >     self.test(*self.arg)
> >   File "/usr/lib/python3/dist-packages/nose/tools/nontrivial.py", line 67, in newfunc
> >     raise AssertionError(message)
> > AssertionError: test_concatenate_read_only() did not raise SystemExit
> > -------------------- >> begin captured logging << --------------------
> > iss.util: INFO: Stitching input files together
> > --------------------- >> end captured logging << ---------------------
> >
> > ----------------------------------------------------------------------
> > Ran 41 tests in 34.881s
> >
> > FAILED (failures=1)
> 
> I noticed that data/read_only.fasta should stay with read only (0444)
> permission, but it seems that git cannot hold that permission. So, for
> autopkgtest (in debian/tests/run-unit-test), I set manually the
> permission before running the unit test[1].
> 
> [1] https://salsa.debian.org/med-team/insilicoseq/-/blob/master/debian/tests/run-unit-test#L8
> 
> Is there a better way for controlling the permission? Thank you!

I tried to build and was running into the same issue.  I've now made
the test a user example as I'm usually doing tests.  This now works
when I run the script on my local machine - but not in my pbuilder
building environment.

I decided to upload anyway to new queue and we can sort out this issue
later - if all fails by deactivating this specific test.

Thank you for your work on this

      Andreas.

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