debian-med Jul 2015 by author

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Fabian Klötzl

Re: Sponsering libdivsufsort? Jul 28

Hervé Ménager

[no subject] Jul 13

"Steffen Möller"

Copenhagen offered to host upcoming Debian Med Sprint - alternative suggestions? Jul 25
Aw: Re: Location for CWL tool descriptions Jul 06
Aw: Re: Re: Location for CWL tool descriptions Jul 08

Sébastien Jodogne

Re: orthanc-postgresql on Debian Jul 02
Re: Orthanc 0.9.1 Jul 03
Orthanc 0.9.1 Jul 02
Re: Refactoring of the Orthanc subpackages Jul 01
Re: Orthanc 0.9.1 Jul 11
Re: Orthanc 0.9.1 Jul 03

Fabian Klötzl

Re: Sponsering libdivsufsort? Jul 28

Afif Elghraoui

Re: python-pbcore's rejection Jul 11
Backport for python-cobra Jul 17
Re: "Easy to fix" bug-popping Jul 31
Re: Python-pysam for unstable? Jul 12
Re: COBRApy available as a Debian package Jul 24
python-pbcore's rejection Jul 11
python-cobra packaging bug fixed and ready for upload Jul 11
Re: python-pbcore's rejection Jul 11
Re: Python-pysam for unstable? Jul 11
Re: Python-pysam for unstable? Jul 11
Re: Python-pysam for unstable? Jul 12
Re: Blasr package ready for upload Jul 31
Re: Blasr package ready for upload Jul 31
Blasr package ready for upload Jul 31
Re: mips/mipsel in samtools and pysam (was: finalizing pysam 0.8.3) Jul 25
pbcore post-upload changelog Jul 29
Re: Backport for python-cobra Jul 17
Re: Python-pysam for unstable? Jul 11
Re: python-cobra new release ready for upload Jul 10
Re: finalizing pysam 0.8.3 Jul 24
Re: Trying to run build time tests using nosetest for python-pysam Jul 23
Re: Python-pysam for unstable? Jul 12
Re: mips/mipsel in samtools and pysam Jul 28
COBRApy available as a Debian package Jul 24
python-cobra new release ready for upload Jul 10
Debian packages for the SMRTAnalysis suite (and Python3 compatibility) Jul 25
Re: Python-pysam for unstable? Jul 11
Re: pbcore post-upload changelog Jul 29
Re: Trying to run build time tests using nosetest for python-pysam Jul 17
Re: Python-pysam for unstable? Jul 12
Re: finalizing pysam 0.8.3 Jul 25
Re: finalizing pysam 0.8.3 (was: Trying to run build time tests using nosetest for python-pysam) Jul 23

Alba Crespi

Re: [ftpmaster@ftp-master.debian.org: r-cran-phangorn_1.99-13-1_amd64.changes is NEW] Jul 02

Alex Mestiashvili

sponsorship for plip Jul 17

Ali Ebrahim

Re: COBRApy available as a Debian package Jul 24
Re: COBRApy available as a Debian package Jul 24

Andreas Tille

Re: Backport for python-cobra Jul 17
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15
Re: finalizing pysam 0.8.3 Jul 25
Re: Status of castxml [and ITK] packaging? Jul 18
Re: Python-pysam for unstable? Jul 12
Re: finalizing pysam 0.8.3 Jul 24
Re: Trying to run build time tests using nosetest for python-pysam Jul 23
Re: mips/mipsel in samtools and pysam Jul 28
Re: python-pbcore's rejection Jul 11
Strange *.so names in pbuild do require tricks for test suite (Was: Trying to run build time tests using nosetest for python-pysam) Jul 21
Re: mips/mipsel in samtools and pysam Jul 28
Re: Orthanc 0.9.1 Jul 03
Problem creating R module in hyphy Jul 09
Re: All predependencies for qiime 1.9? [Was: Bug#793585: ITP: ea-utils -- command-line tools for processing biological sequencing data] Jul 29
Re: Python-pysam for unstable? Jul 12
Re: Python-pysam for unstable? Jul 12
Re: Blasr package ready for upload Jul 31
Re: Help needed to try to fix activiz.net Jul 08
[ROM] clinica - unmaintained and RC buggy Jul 15
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 16
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 17
Re: Random number generator and regression tests (Re: Python-pysam for unstable?) Jul 13
Re: Bug#790524: src:gmt: takes over files from several unrelated packages (was: Re: gmt: libgenome-perl in sid already provides /usr/bin/gmt) Jul 05
Re: Remaining licensing issues in HyPhy (Was: Problem creating R module in hyphy) Jul 11
Re: Git repository of htslib is lacking pristine-tar Jul 29
Re: Sponsoring request: maxflow initial upload Jul 21
Re: Python-pysam for unstable? Jul 11
Re: python-cobra new release ready for upload Jul 10
Re: Seqan moved from svn to Git Jul 09
Re: Sponsoring request: maxflow initial upload Jul 25
[ftpmaster@ftp-master.debian.org: r-cran-phangorn_1.99-13-1_amd64.changes is NEW] Jul 02
Re: Sponsering libdivsufsort? Jul 28
Re: All predependencies for qiime 1.9? [Was: Bug#793585: ITP: ea-utils -- command-line tools for processing biological sequencing data] Jul 29
Re: itksnap -> unstable? Jul 25
Re: Help with Debian packaging of DCMTK++ Jul 15
Re: Updated the package to new invesalius version Jul 17
Re: Sponsoring request: maxflow initial upload Jul 22
Git repository of htslib is lacking pristine-tar Jul 28
Re: Orthanc 0.9.1 Jul 03
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15
Re: python-pbcore's rejection Jul 11
Re: Sponsoring request: maxflow initial upload Jul 23
Re: Git repository of htslib is lacking pristine-tar Jul 28
Re: sponsorship for plip Jul 17
Clinica is in danger to be removed from Debian (Was: Bug#753854: clinica: depends on libgee2 which is deprecated) Jul 03
All predependencies for qiime 1.9? [Was: Bug#793585: ITP: ea-utils -- command-line tools for processing biological sequencing data] Jul 25
Re: king debian pkg (2.21.120420-2, 2.21.120420+dfsg-1) questions Jul 21
Re: Seqan moved from svn to Git Jul 28
Re: Help needed to try to fix activiz.net Jul 09
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 23
Re: pbcore post-upload changelog Jul 29
Re: Updated the package to new invesalius version Jul 17
Re: Trying to run build time tests using nosetest for python-pysam Jul 17
Re: Status of ITK 4.8 packaging Jul 20
Re: "Easy to fix" bug-popping Jul 31
Re: Copenhagen offered to host upcoming Debian Med Sprint - alternative suggestions? Jul 26
Re: Help needed to try to fix activiz.net Jul 08
Re: king debian pkg (2.21.120420-2, 2.21.120420+dfsg-1) questions Jul 22
Re: [Debian-med-packaging] Bug#793369: Any volunteer to maintain JAI that is RC buggy and dead upstream (Was: Bug#793369: jai-core: FTBFS - JPEGImageDecoder.java:29: error: package com.sun.image.codec.jpeg does not exist) Jul 23
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Re: Sponsering libdivsufsort? Jul 28
Re: Plastimatch update is ready Jul 30
Re: Help needed to try to fix activiz.net Jul 09
Re: Proposal 212 - Debian Med BoF (Andreas Tille) Jul 04
Re: python-pbcore's rejection Jul 11
Re: Orthanc 0.9.1 Jul 03
Seeking replacement for some Java icons in package mauve-aligner Jul 15
Re: Bug#790524: src:gmt: takes over files from several unrelated packages (was: Re: gmt: libgenome-perl in sid already provides /usr/bin/gmt) Jul 04
Re: Problem creating R module in hyphy Jul 09
Re: king debian pkg (2.21.120420-2, 2.21.120420+dfsg-1) questions Jul 22
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 30
Any volunteer to maintain JAI that is RC buggy and dead upstream (Was: Bug#793369: jai-core: FTBFS - JPEGImageDecoder.java:29: error: package com.sun.image.codec.jpeg does not exist) Jul 23
Re: python-pbcore's rejection Jul 11
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 16
Re: [jmw@debian.org: Bug#789314: plastimatch: FTBFS with libinsighttoolkit4.7] Jul 11
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 24
Re: Bug#790524: src:gmt: takes over files from several unrelated packages (was: Re: gmt: libgenome-perl in sid already provides /usr/bin/gmt) Jul 04
Re: Updated the package to new invesalius version Jul 17
Re: python-cobra new release ready for upload Jul 10
Re: Bug#790524: src:gmt: takes over files from several unrelated packages (was: Re: gmt: libgenome-perl in sid already provides /usr/bin/gmt) Jul 04
Re: Help needed to try to fix activiz.net Jul 08
Re: Bug#793192: ITP: suitename -- categorize each suite in an RNA backbone Jul 23
Python-pysam for unstable? Jul 10
Re: Trying to run build time tests using nosetest for python-pysam Jul 22
[MoM] Re: Help with Debian packaging of DCMTK++ Jul 15
Seqan moved from svn to Git Jul 09
Re: king debian pkg (2.21.120420-2, 2.21.120420+dfsg-1) questions Jul 22
Hint for newcomers: Please check developers dashboard Jul 31
Re: Plastimatch update is ready Jul 30
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 22
Trying to run build time tests using nosetest for python-pysam Jul 15
Re: Orthanc 0.9.1 Jul 11
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 16
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 20
Re: All predependencies for qiime 1.9? [Was: Bug#793585: ITP: ea-utils -- command-line tools for processing biological sequencing data] Jul 29
Fwd: Schedule information for 212 - Debian Med BoF Jul 29
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Re: All predependencies for qiime 1.9? [Was: Bug#793585: ITP: ea-utils -- command-line tools for processing biological sequencing data] Jul 30
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 30
Re: Backport for python-cobra Jul 17
Re: Please tag latest Beast version on Github Jul 17
Re: fw4spl ready to upload (restricted to amd64) Jul 16
Re: r-cran-scales updated Jul 30
Re: Plastimatch update is ready Jul 30
Re: python-bz2file packaged; python-screed + khmer updated Jul 08
Re: Plastimatch update is ready Jul 30
Re: Location for CWL tool descriptions Jul 05
Please choose a free license for fastml (Was: Test failures when trying to package Gubbins for Debian) Jul 06
Re: [med-svn] [probabel] 03/03: New upstream version; use Arch: any in d/control Jul 10
Re: Bug#793192: ITP: suitename -- categorize each suite in an RNA backbone Jul 23
Re: python-pbcore's rejection Jul 11
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 23
Remaining licensing issues in HyPhy (Was: Problem creating R module in hyphy) Jul 10
Re: Test failures when trying to package Gubbins for Debian Jul 06
Re: your mail Jul 13
Re: Bug#790524: src:gmt: takes over files from several unrelated packages (was: Re: gmt: libgenome-perl in sid already provides /usr/bin/gmt) Jul 05
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Re: "Easy to fix" bug-popping Jul 29
Sponsering libdivsufsort? Jul 28

Axel Beckert

Benjamin Eikel

r-cran-scales updated Jul 30
Re: r-cran-scales updated Jul 30

Charles Plessy

Re: Git repository of htslib is lacking pristine-tar Jul 30
Re: Python-pysam for unstable? Jul 12
Re: Git repository of htslib is lacking pristine-tar Jul 29
Re: Python-pysam for unstable? Jul 11
Random number generator and regression tests (Re: Python-pysam for unstable?) Jul 12
Re: mips/mipsel in samtools and pysam Jul 28

Corentin Desfarges

fw4spl ready to upload (restricted to amd64) Jul 16
Re: Help needed to try to fix activiz.net Jul 08
fw4spl with vtk6 and qt5 Jul 13
Help needed to try to fix activiz.net Jul 08
Re: fw4spl ready to upload (restricted to amd64) Jul 16
Re: Help needed to try to fix activiz.net Jul 09
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15
Re: Help needed to try to fix activiz.net Jul 09
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15
Re: Help needed to try to fix activiz.net Jul 08
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15
Re: Help needed to try to fix activiz.net Jul 09
#777765 : activiz.net: ftbfs with GCC-5 Jul 15

Debian Bug Tracking System

Bug#784863: marked as done (ITP: kmer-tools -- suite of tools for DNA sequence analysis) Jul 27
Processed: your mail Jul 28
Bug#788224: marked as done (ITP: python-cobra -- constraint-based modeling of biological networks) Jul 09
Bug#787407: Info received (Status of castxml [and ITK] packaging?) Jul 18
Processed: Declare ITP dependencies Jul 25
Processed (with 1 errors): Fix issues caused by bad email formatting Jul 27
Bug#787981: marked as done (ITP: python-pbcore -- Python library for processing Pacific Biosciences data, files) Jul 11

Dmitry Smirnov

Please help to nail GinkgoCADx bugs in Debian Jul 04

Gert Wollny

Re: Sponsoring request: maxflow initial upload Jul 22
itksnap -> unstable? Jul 25
Re: Sponsoring request: maxflow initial upload Jul 25
Re: Sponsoring request: maxflow initial upload Jul 21
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 16
Re: Status of ITK 4.8 packaging Jul 20
Sponsoring request: maxflow initial upload Jul 21
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 16
Re: Sponsoring request: maxflow initial upload Jul 22

Ghislain Vaillant

Re: Git repository of htslib is lacking pristine-tar Jul 29
Re: Policy and Best Practices Jul 29
Re: Git repository of htslib is lacking pristine-tar Jul 28
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 17

gregor herrmann

Re: Bug#790524: src:gmt: takes over files from several unrelated packages (was: Re: gmt: libgenome-perl in sid already provides /usr/bin/gmt) Jul 04

Gregory Sharp

Re: Plastimatch update is ready Jul 30
Re: Plastimatch update is ready Jul 30
Plastimatch update is ready Jul 29

Julien Lamy

Help with Debian packaging of DCMTK++ Jul 15
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 16
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 30
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 16
Re: Help with Debian packaging of DCMTK++ Jul 15
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 31
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 30
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 17
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 23
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 20
Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 23
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 24
[MoM] Re: Re: Help with Debian packaging of DCMTK++ Jul 16

Karsten Hilbert

Re: Orthanc 0.9.1 Jul 03
Re: Please help to nail GinkgoCADx bugs in Debian Jul 05
orthanc-postgresql on Debian Jul 01

Kevin Murray

Re: Seqan moved from svn to Git Jul 09
Bug#791395: ITP: wgsim -- Simulate whole-genome sequencing data Jul 04
"Easy to fix" bug-popping Jul 29

L.C. Karssen

Re: [med-svn] [probabel] 03/03: New upstream version; use Arch: any in d/control Jul 10

Mathias Behrle

Re: Seeking replacement for some Java icons in package mauve-aligner Jul 15

Michael Crusoe

Re: python-bz2file packaged; python-screed + khmer updated Jul 08
Location for CWL tool descriptions Jul 05
Re: Re: Location for CWL tool descriptions Jul 07

Michael Prisant

Re: Bug#793192: ITP: suitename -- categorize each suite in an RNA backbone Jul 23
Re: king debian pkg (2.21.120420-2, 2.21.120420+dfsg-1) questions Jul 22

Olivier Sallou

Re: [Debian-med-packaging] Bug#793369: Any volunteer to maintain JAI that is RC buggy and dead upstream (Was: Bug#793369: jai-core: FTBFS - JPEGImageDecoder.java:29: error: package com.sun.image.codec.jpeg does not exist) Jul 23

Paul Novotny

Re: Status of ITK 4.8 packaging Jul 25
Re: Status of ITK 4.8 packaging Jul 21
Re: Status of ITK 4.8 packaging Jul 21
Re: Status of ITK 4.8 packaging Jul 25
Re: Status of ITK 4.8 packaging Jul 27
Re: Status of ITK 4.8 packaging Jul 20

Peter Rice

Re: description of debian-med packages using EDAM Jul 13

Philip Hands

Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 23

Sascha Steinbiss

Re: Hint for newcomers: Please check developers dashboard Jul 31
Bug#793907: ITP: tantan -- low complexity and tandem repeat masker for biosequences Jul 28

Sebastiaan Couwenberg

Simon Kainz

Re: Administrative message for those who are using gmail addresses Jul 08

Steve M. Robbins

Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Status of ITK 4.8 packaging Jul 20
Policy and Best Practices Jul 29
Re: Help needed to try to fix activiz.net Jul 09
Re: Status of ITK 4.8 packaging Jul 25
Re: Status of ITK 4.8 packaging Jul 21
Re: Bug#793392: ITP: dcmtkpp -- Wrappers around DCMTK to have an easier API Jul 24
Re: Status of castxml [and ITK] packaging? Jul 18
Re: Status of ITK 4.8 packaging Jul 24
Re: Status of castxml [and ITK] packaging? Jul 19
Re: Status of ITK 4.8 packaging Jul 24
Re: [MoM] Re: Help with Debian packaging of DCMTK++ Jul 17

Steve Robbins

Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15
Re: #777765 : activiz.net: ftbfs with GCC-5 Jul 15

Thiago Franco de Moraes

Re: Updated the package to new invesalius version Jul 17
Re: Updated the package to new invesalius version Jul 17

Thiago Franco Moraes

Re: Updated the package to new invesalius version Jul 17

Thorsten Alteholz

Re: python-pbcore's rejection Jul 11

Tim Rühsen

Re: Bug#790524: src:gmt: takes over files from several unrelated packages (was: Re: gmt: libgenome-perl in sid already provides /usr/bin/gmt) Jul 04

Tim Booth

Yaroslav Halchenko

Re: Copenhagen offered to host upcoming Debian Med Sprint - alternative suggestions? Jul 26

Zeev Pekar

Re: Packaging ASL Jul 21

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