Re: All predependencies for qiime 1.9? [Was: Bug#793585: ITP: ea-utils -- command-line tools for processing biological sequencing data]
Hi Tim,
On Thu, Jul 30, 2015 at 05:14:42PM +0100, Tim Booth wrote:
> I pulled your modifications to python-skbio but it doesn't seem to build
> right on Bio-Linux 8 with the modifications you made to the package.
> We're getting to the point where Ubuntu LTS is a way behind Sid again so
> you probably have a more sophisticated pybuild version to help you.
Yes. I needed to *remove* the debian/*.install files since pybuild does
on its own.
> For now I'll just keep my version separate and re-sync on the next LTS
> release. It shouldn't impact QIIME at all.
Yes.
> I've fixed the RDP issue I was seeing and pushed the latest
> python-burrito-fillings, which is where the fix is applied. The patches
> and workarounds in here also constitute most of my original effort in
> getting QIIME 1.9.0 to work. I'll be interested to see if the tests
> pass on Sid.
I'll try once all predependencies are available in sid.
> Likewise I've updated QIIME to the 1.9.1 point release and the version
> you have in SVN is what has just gone onto Bio-Linux.
:-)
Thanks for your cooperation
Andreas.
--
http://fam-tille.de
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