debian-med Nov 2020 by subject

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"Education Tab" - extended the Spreadsheet as a bit of an experiment +nim-kexpr Re: RFS+peer review: nim-lapper /usr/bin/picard Re: bcbio will need another while - needs gatk Re: [Debian-med-packaging] Bug#973612: I'm afrait I did some kind of sabotage by upgrading civetweb ... [karsten.hilbert@gmx.net: Bug#973612: orthanc: libcivetweb version mismatch] [RFS/DM] mapsembler2 2.2.4+dfsg1-3 [RFS/DM] prinseq-lite 0.20.4-6 [RFS] alter-sequence-alignment [RFS] and peer review: mosdepth [RFS] artemis [RFS] cif-tools [RFS] concurrentqueue [RFS] gsort [RFS] gsort and dependencies (Was: /usr/bin/picard Re: bcbio will need another while - needs gatk) [RFS] hnswlib [RFS] igv [RFS] kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 [RFS] kraken2 [RFS] libargs [RFS] libcifpp [RFS] libpj-java Re: [RFS] libsecrecy 0.0.2+dfsg-1 [RFS] libsecrecy 0.0.2+dfsg-1 (Was: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro) [RFS] libzeep 5.0.1 [RFS] libzeep, again [RFS] lighter [RFS] mssstest [RFS] neobio [RFS] nutsqlite 2.0.6-3 [RFS] paleomix 1.3.2-1 [RFS] parasail [RFS] phylonium [RFS] pizzly [RFS] plasmidseeker [RFS] plast [RFS] plip [RFS] pyode [RFS] pyqi [RFS] python-cobra [RFS] python-cutadapt [RFS] python-dendropy [RFS] python-dnaio [RFS] python-ete3 3.1.2+dfsg-2 [RFS] python-etelemetry [RFS] python-parasail [RFS] python-treetime [RFS] quorum 1.1.1-4 [RFS] seqmagick 0.8.2-1 [RFS] srst2 0.2.0-8 refresh [RFS] suitename [RFS] tortoize [RFS] trnascan-se 2.0.7+ds-1 [RFS] xenium Any volunteer to discuss a free license for varscan again? (Task for non-coding volunteers!) armhf regressions in a few packages bcbio will need another while - needs gatk Re: Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix) Bug#963630: RFP-ing libaparapi-java due to licensing issues at the moment Bug#963630: RFS-ing libaparapi-java due to licensing issues at the moment Bug#973568: ITP: libpj-java -- API and middleware for parallel programming in Java Bug#973568: marked as done (ITP: libpj-java -- API and middleware for parallel programming in Java) Bug#974615: ITP: libsecrecy -- C++ header only library for random access to encrypted files December 2020 bug squashing Done Re: [RFS] artemis done Re: [RFS] concurrentqueue Done Re: [RFS] kraken2 done Re: [RFS] libargs done Re: [RFS] lighter done Re: [RFS] mssstest done Re: [RFS] parasail Done Re: [RFS] pizzly done Re: [RFS] python-dendropy done Re: [RFS] python-treetime Falcon builds but autopkgtest fails (and some build time test failures are ignored gffread and wham-align no longer in testing Re: gsort_0.1.4-1_amd64.changes REJECTED Help for updating pbcopper is needed Help needed: pftools: multiple definition of `VectorPosition' Help to finalise libjloda-java needed Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix) hts-nim-tools ready for peer review Re: I'm afrait I did some kind of sabotage by upgrading civetweb ... [karsten.hilbert@gmx.net: Bug#973612: orthanc: libcivetweb version mismatch] Is there any blockers for shasta upload? Issue with jellyfish autopkgtest on arm64 Kmc might cause iva autopkgtest fail on arm64 Re: Kmc might cause iva autopkgtest fail on arm64 (possibly memory issue?) Leaving the Project libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Re: libmaus2 update attempt 2.0.766 libsis-jhdf5-java hasn't migrated to testing since last 18 days Re: libzeep update maude does not build on 32-bit architectures Metadata exchange with the Tools Platform Ecosystem mrtrix3 New Jalview release -- hesitating on license ORCA Packaging ITK version 5 Packaging Jalview -- any general guidelines concerning privacy? PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information] Planning a Debian Med Covid-19 project Re: Please consider a free license for tRNAscan-SE Re: Please enable free redistribution of Multiple Sclerosis Severity Score Processed: RFP-ing libaparapi-java due to licensing issues at the moment Processed: RFP: libaparapi-java -- framework for executing native Java code on the GPU Processed: RFS-ing libaparapi-java due to licensing issues at the moment Progress of Snpeff packaging (Was: Re: /usr/bin/picard Re: bcbio will need another while - needs gatk) Re: Project idea: port GKL to non-x86 qiime2 status update Regarding LoRTIA request for auto-build for vienna-rna Re: resfinder - test.fsa file missing for debian/tests/run-unit-test RFS and peer review: nim-d3 RFS+peer review: nim-lapper RFS: nim-hts (hts-nim on sheet) RFS: PeptideBuilder RFS: r-bioc-affxparser RFS: r-cran-ff Salsa CI Same for pbbam (Was: Help for updating pbcopper is needed) seqcluster: @Nilesh, please kindly revisit the testing Re: shapeit4 and AVX2 Source upload of orthanc-gdcm Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED testing the test environment Videoconference today, Monday 2020-11-02 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)) Videoconference tomorrow, Tuesday 2020-11-17 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)) Vienna rna will autobuild now VT Changes: Please review what if upstream does not have a version number? The last update was on 23:20 GMT Mon Nov 30. There are 344 messages. Page 1 of 1.
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