debian-med Nov 2020 by author

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Bálint Réczey

Salsa CI Nov 04

Dylan Aïssi

Re: shapeit4 and AVX2 Nov 05

Hervé Ménager

Metadata exchange with the Tools Platform Ecosystem Nov 11
Re: Metadata exchange with the Tools Platform Ecosystem Nov 11

Étienne Mollier

Re: shapeit4 and AVX2 Nov 09
Re: [RFS] srst2 0.2.0-8 refresh Nov 10
Re: Help for updating pbcopper is needed Nov 12
Re: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 13
Re: [RFS] python-ete3 3.1.2+dfsg-2 Nov 04
Re: [RFS/DM] mapsembler2 2.2.4+dfsg1-3 Nov 09
[RFS] trnascan-se 2.0.7+ds-1 Nov 04
libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 12
[RFS] nutsqlite 2.0.6-3 Nov 04
Re: libmaus2 update attempt 2.0.766 Nov 18
[RFS/DM] prinseq-lite 0.20.4-6 Nov 09
[RFS/DM] mapsembler2 2.2.4+dfsg1-3 Nov 09
Bug#974615: ITP: libsecrecy -- C++ header only library for random access to encrypted files Nov 12
[RFS] seqmagick 0.8.2-1 Nov 14
[RFS] srst2 0.2.0-8 refresh Nov 10
Re: [RFS/DM] mapsembler2 2.2.4+dfsg1-3 Nov 09
Re: [RFS] libzeep, again Nov 16
[RFS] quorum 1.1.1-4 Nov 28
Re: [RFS] and peer review: mosdepth Nov 03
Re: [RFS] seqmagick 0.8.2-1 Nov 14
Re: [RFS] paleomix 1.3.2-1 Nov 03
Re: shapeit4 and AVX2 Nov 09
[RFS] python-ete3 3.1.2+dfsg-2 Nov 04
Re: [RFS] libzeep, again Nov 14
Re: Please consider a free license for tRNAscan-SE Nov 04
Re: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 12
[RFS] libsecrecy 0.0.2+dfsg-1 (Was: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro) Nov 14
Re: Packaging ITK version 5 Nov 16
Re: RFS+peer review: nim-lapper Nov 04
Re: [RFS] libsecrecy 0.0.2+dfsg-1 Nov 15
Re: [RFS] quorum 1.1.1-4 Nov 29
qiime2 status update Nov 30
Re: Same for pbbam (Was: Help for updating pbcopper is needed) Nov 12
Re: [RFS] and peer review: mosdepth Nov 03
[RFS] paleomix 1.3.2-1 Nov 02
[RFS] kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 Nov 25
Re: [RFS] kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 Nov 26
Re: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 12

Fabian Klötzl

Re: shapeit4 and AVX2 Nov 05
Re: shapeit4 and AVX2 Nov 05
Re: [RFS] phylonium Nov 06

Sébastien Jodogne

Steffen Möller

Re: ORCA Nov 03
Re: Metadata exchange with the Tools Platform Ecosystem Nov 11
done Re: [RFS] mssstest Nov 18
done Re: [RFS] libargs Nov 06
done Re: [RFS] python-treetime Nov 17
done Re: [RFS] python-dendropy Nov 11
RFS+peer review: nim-lapper Nov 04
Done Re: [RFS] pizzly Nov 04
Re: ORCA Nov 04
Re: Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix) Nov 07
Re: [RFS] libcifpp Nov 17
Re: New Jalview release -- hesitating on license Nov 27
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14
Re: RFS: nim-hts (hts-nim on sheet) Nov 01
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 01
Re: Planning a Debian Med Covid-19 project Nov 07
gffread and wham-align no longer in testing Nov 12
RFS: nim-hts (hts-nim on sheet) Nov 01
Re: hts-nim-tools ready for peer review Nov 08
Re: RFS: nim-hts (hts-nim on sheet) Nov 01
Re: [RFS] and peer review: mosdepth Nov 03
/usr/bin/picard Re: bcbio will need another while - needs gatk Nov 13
Re: RFS and peer review: nim-d3 Nov 11
[RFS] and peer review: mosdepth Nov 02
RFS: r-cran-ff Nov 19
Re: "Education Tab" - extended the Spreadsheet as a bit of an experiment Nov 02
+nim-kexpr Re: RFS+peer review: nim-lapper Nov 04
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14
Re: ORCA Nov 02
done Re: [RFS] parasail Nov 27
Re: seqcluster: @Nilesh, please kindly revisit the testing Nov 09
Re: [RFS] gsort and dependencies (Was: /usr/bin/picard Re: bcbio will need another while - needs gatk) Nov 15
bcbio will need another while - needs gatk Nov 12
RFS: PeptideBuilder Nov 28
RFS and peer review: nim-d3 Nov 11
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 15
Re: New Jalview release -- hesitating on license Nov 28
Planning a Debian Med Covid-19 project Nov 06
done Re: [RFS] concurrentqueue Nov 04
Re: [RFS] and peer review: mosdepth Nov 03
Re: RFS and peer review: nim-d3 Nov 11
done Re: [RFS] lighter Nov 15
seqcluster: @Nilesh, please kindly revisit the testing Nov 08
Re: Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix) Nov 06
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14
hts-nim-tools ready for peer review Nov 07
Re: RFS: PeptideBuilder Nov 29
Re: Metadata exchange with the Tools Platform Ecosystem Nov 11
Done Re: [RFS] artemis Nov 12
Re: RFS: r-cran-ff Nov 19
Re: [RFS] and peer review: mosdepth Nov 03
RFS: r-bioc-affxparser Nov 19
"Education Tab" - extended the Spreadsheet as a bit of an experiment Nov 02
Re: Project idea: port GKL to non-x86 Nov 18
Re: gsort_0.1.4-1_amd64.changes REJECTED Nov 22
Re: RFS+peer review: nim-lapper Nov 04
Done Re: [RFS] kraken2 Nov 12

Aaron M. Ucko

Andreas Tille

Re: [RFS] srst2 0.2.0-8 refresh Nov 10
Re: [RFS] hnswlib Nov 11
Re: [RFS] phylonium Nov 06
Re: Metadata exchange with the Tools Platform Ecosystem Nov 12
Re: [RFS] alter-sequence-alignment Nov 16
Re: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 12
Re: Salsa CI Nov 04
Re: Kmc might cause iva autopkgtest fail on arm64 (possibly memory issue?) Nov 16
Re: [RFS] quorum 1.1.1-4 Nov 28
Re: resfinder - test.fsa file missing for debian/tests/run-unit-test Nov 28
Re: [RFS] xenium Nov 12
Re: Please enable free redistribution of Multiple Sclerosis Severity Score Nov 24
Re: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 14
Re: [RFS] tortoize Nov 26
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14
Re: Project idea: port GKL to non-x86 Nov 18
Re: Planning a Debian Med Covid-19 project Nov 06
Any volunteer to discuss a free license for varscan again? (Task for non-coding volunteers!) Nov 17
Re: [RFS] paleomix 1.3.2-1 Nov 03
Re: [RFS] libpj-java Nov 03
Re: ORCA Nov 03
Help for updating pbcopper is needed Nov 12
Re: [RFS] tortoize Nov 27
Re: Bug#954170: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix) Nov 07
Re: [RFS] python-cutadapt Nov 13
Re: Help to finalise libjloda-java needed Nov 18
Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix) Nov 05
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14
Re: Packaging Jalview -- any general guidelines concerning privacy? Nov 27
Re: Issue with jellyfish autopkgtest on arm64 Nov 17
Re: libsis-jhdf5-java hasn't migrated to testing since last 18 days Nov 27
Re: PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information] Nov 17
Re: mrtrix3 Nov 26
Re: I'm afrait I did some kind of sabotage by upgrading civetweb ... [karsten.hilbert@gmx.net: Bug#973612: orthanc: libcivetweb version mismatch] Nov 03
Re: [RFS] pyode Nov 13
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14
Help needed: pftools: multiple definition of `VectorPosition' Nov 24
Re: libsis-jhdf5-java hasn't migrated to testing since last 18 days Nov 26
Re: [RFS] tortoize Nov 26
Issue with jellyfish autopkgtest on arm64 Nov 16
Re: New Jalview release -- hesitating on license Nov 27
Re: [RFS] neobio Nov 16
Videoconference today, Monday 2020-11-02 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)) Nov 02
Kmc might cause iva autopkgtest fail on arm64 Nov 16
Re: Regarding LoRTIA Nov 02
Re: [RFS/DM] prinseq-lite 0.20.4-6 Nov 09
Re: [RFS] mssstest Nov 18
Re: [RFS] python-cobra Nov 05
Re: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 12
Re: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro Nov 13
Videoconference tomorrow, Tuesday 2020-11-17 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020)) Nov 16
Same for pbbam (Was: Help for updating pbcopper is needed) Nov 12
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 02
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 20
Re: [RFS] libzeep 5.0.1 Nov 10
Re: December 2020 bug squashing Nov 29
Re: [RFS] libzeep 5.0.1 Nov 10
Re: [RFS] python-parasail Nov 06
Falcon builds but autopkgtest fails (and some build time test failures are ignored Nov 30
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 02
Re: [RFS/DM] mapsembler2 2.2.4+dfsg1-3 Nov 09
Re: [RFS] suitename Nov 11
Re: Progress of Snpeff packaging (Was: Re: /usr/bin/picard Re: bcbio will need another while - needs gatk) Nov 20
Help to finalise libjloda-java needed Nov 18
Re: Help needed: pftools: multiple definition of `VectorPosition' Nov 25
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 15
Re: [RFS] mssstest Nov 18
Re: Help for updating pbcopper is needed Nov 12
Re: Help needed: pftools: multiple definition of `VectorPosition' Nov 25
Re: [RFS] python-etelemetry Nov 05
Re: [RFS] plip Nov 10
Re: what if upstream does not have a version number? Nov 30
Re: libmaus2 update attempt 2.0.766 Nov 18
Re: Kmc might cause iva autopkgtest fail on arm64 (possibly memory issue?) Nov 16
Re: [RFS] plast Nov 12
Re: [RFS] and peer review: mosdepth Nov 03
Re: [RFS] python-ete3 3.1.2+dfsg-2 Nov 04
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 02
Re: Metadata exchange with the Tools Platform Ecosystem Nov 12
Re: VT Changes: Please review Nov 10
Re: Help: Test suite failures (Was: ITP: anndata -- Annotated gene by sample numpy matrix) Nov 06
Re: [RFS] python-dnaio Nov 08
Re: Packaging ITK version 5 Nov 16
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 02
Re: [RFS] nutsqlite 2.0.6-3 Nov 04
Re: [RFS] libsecrecy 0.0.2+dfsg-1 (Was: libmaus2 update attempt 2.0.762^W 764^W 762 & libsecrecy intro) Nov 14
Re: [RFS] kineticstools 0.6.1+git20200729.e3723e0+dfsg-1 Nov 26

Andrei Rozanski

Leaving the Project Nov 07

Andrius Merkys

Re: Regarding LoRTIA Nov 03
Re: [RFS] cif-tools Nov 23
PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information] Nov 17
Re: [RFS] cif-tools Nov 23
Re: PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information] Nov 17
Re: what if upstream does not have a version number? Nov 30

Antoni Villalonga

VT Changes: Please review Nov 09

Debian Bug Tracking System

Diane Trout

Gert Wollny

Re: Packaging ITK version 5 Nov 16

Giulio Genovese

Re: shapeit4 and AVX2 Nov 05

James Procter (Staff)

Re: "Education Tab" - extended the Spreadsheet as a bit of an experiment Nov 02

John Marshall

Re: Help needed: pftools: multiple definition of `VectorPosition' Nov 24

Karsten Hilbert

Re: what if upstream does not have a version number? Nov 30

Maarten L. Hekkelman

Re: [RFS] libzeep 5.0.1 Nov 10
what if upstream does not have a version number? Nov 30
Re: PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information] Nov 18
Re: [RFS] tortoize Nov 27
Re: [RFS] libzeep, again Nov 16
[RFS] tortoize Nov 25
Re: [RFS] tortoize Nov 27
[RFS] libzeep 5.0.1 Nov 09
testing the test environment Nov 08
Re: [RFS] libcifpp Nov 18
[RFS] cif-tools Nov 23
[RFS] libcifpp Nov 17
Re: [RFS] libzeep, again Nov 14
[RFS] libzeep, again Nov 14
Re: libzeep update Nov 05
Re: [RFS] tortoize Nov 26
Re: PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information] Nov 17
Re: [RFS] libzeep 5.0.1 Nov 10
Re: [RFS] tortoize Nov 27

Matus Kalas

Re: Metadata exchange with the Tools Platform Ecosystem Nov 11
Re: "Education Tab" - extended the Spreadsheet as a bit of an experiment Nov 02

Michael Crusoe

Re: Planning a Debian Med Covid-19 project Nov 07
Re: Project idea: port GKL to non-x86 Nov 17
Re: testing the test environment Nov 08

Michael R. Crusoe

Re: armhf regressions in a few packages Nov 22
Re: shapeit4 and AVX2 Nov 05
Re: Project idea: port GKL to non-x86 Nov 18
Re: shapeit4 and AVX2 Nov 09

Nilesh Patra

Re: Help needed: pftools: multiple definition of `VectorPosition' Nov 25
Re: RFS and peer review: nim-d3 Nov 11
Re: RFS: PeptideBuilder Nov 29
Re: RFS and peer review: nim-d3 Nov 11
Re: [RFS] hnswlib Nov 11
[RFS] concurrentqueue Nov 04
[RFS] pyqi Nov 27
Re: RFS: nim-hts (hts-nim on sheet) Nov 01
Re: seqcluster: @Nilesh, please kindly revisit the testing Nov 08
[RFS] plast Nov 12
[RFS] kraken2 Nov 12
Re: gsort_0.1.4-1_amd64.changes REJECTED Nov 21
Re: Kmc might cause iva autopkgtest fail on arm64 (possibly memory issue?) Nov 16
Re: RFS: nim-hts (hts-nim on sheet) Nov 01
armhf regressions in a few packages Nov 21
[RFS] mssstest Nov 18
Is there any blockers for shasta upload? Nov 30
Re: RFS+peer review: nim-lapper Nov 04
Re: RFS: r-cran-ff Nov 19
Re: hts-nim-tools ready for peer review Nov 07
[RFS] pyode Nov 13
[RFS] phylonium Nov 06
[RFS] libargs Nov 06
[RFS] gsort Nov 22
[RFS] gsort and dependencies (Was: /usr/bin/picard Re: bcbio will need another while - needs gatk) Nov 15
Re: Help needed: pftools: multiple definition of `VectorPosition' Nov 24
maude does not build on 32-bit architectures Nov 28
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 02
Re: Help needed: pftools: multiple definition of `VectorPosition' Nov 25
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 02
Re: Planning a Debian Med Covid-19 project Nov 07
Re: [RFS] plasmidseeker Nov 21
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 02
[RFS] hnswlib Nov 10
Re: +nim-kexpr Re: RFS+peer review: nim-lapper Nov 04
Re: [RFS] mssstest Nov 18
[RFS] parasail Nov 27
[RFS] xenium Nov 12
[RFS] alter-sequence-alignment Nov 16
Re: [RFS] gsort Nov 22
[RFS] suitename Nov 11
[RFS] plasmidseeker Nov 21
Re: stringtie_2.1.4+ds-1_amd64.changes REJECTED Nov 01
[RFS] lighter Nov 15
[RFS] python-dendropy Nov 11
Re: [RFS] and peer review: mosdepth Nov 03
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14
[RFS] python-cutadapt Nov 13
[RFS] pizzly Nov 04
[RFS] neobio Nov 16
[RFS] python-dnaio Nov 08
[RFS] python-cobra Nov 05
[RFS] plip Nov 10
[RFS] python-etelemetry Nov 05
Re: [RFS] and peer review: mosdepth Nov 03
Re: [RFS] and peer review: mosdepth Nov 03
libsis-jhdf5-java hasn't migrated to testing since last 18 days Nov 26
Re: [RFS] plasmidseeker Nov 21
[RFS] python-parasail Nov 06
[RFS] python-treetime Nov 17
Re: [RFS] and peer review: mosdepth Nov 03
Re: /usr/bin/picard Re: bcbio will need another while - needs gatk Nov 14

olivier sallou

Re: Issue with jellyfish autopkgtest on arm64 Nov 17
Re: libsis-jhdf5-java hasn't migrated to testing since last 18 days Nov 27
Re: PDBx dictionary in Debian [Was: Re: Bug#974973: ITP: libcifpp -- A library for creating and manipulating mmCIF and PDB files containing macro molecular structure information] Nov 17
Vienna rna will autobuild now Nov 08
request for auto-build for vienna-rna Nov 06

Paul Gevers

Re: armhf regressions in a few packages Nov 22
Re: Kmc might cause iva autopkgtest fail on arm64 (possibly memory issue?) Nov 16
Re: Issue with jellyfish autopkgtest on arm64 Nov 17

Philipp Kern

Re: request for auto-build for vienna-rna Nov 07

Pierre Gruet

Re: Packaging Jalview -- any general guidelines concerning privacy? Nov 27
Re: Help to finalise libjloda-java needed Nov 18
Packaging Jalview -- any general guidelines concerning privacy? Nov 26
New Jalview release -- hesitating on license Nov 27
[RFS] artemis Nov 12
Re: New Jalview release -- hesitating on license Nov 28
Progress of Snpeff packaging (Was: Re: /usr/bin/picard Re: bcbio will need another while - needs gatk) Nov 19
Re: libsis-jhdf5-java hasn't migrated to testing since last 18 days Nov 26
Re: Help to finalise libjloda-java needed Nov 18
[RFS] libpj-java Nov 02
[RFS] igv Nov 10
Bug#973568: ITP: libpj-java -- API and middleware for parallel programming in Java Nov 01
Bug#963630: RFP-ing libaparapi-java due to licensing issues at the moment Nov 02
Bug#963630: RFS-ing libaparapi-java due to licensing issues at the moment Nov 02

Sascha Steinbiss

Re: Kmc might cause iva autopkgtest fail on arm64 Nov 16

shruti gupta

Regarding LoRTIA Nov 01

Steven Robbins

Packaging ITK version 5 Nov 15
Re: Packaging ITK version 5 Nov 16

Thorsten Alteholz

December 2020 bug squashing Nov 29

tony mancill

Re: [RFS] seqmagick 0.8.2-1 Nov 14
Re: [RFS] gsort Nov 22
Re: [RFS] pyqi Nov 27
Re: [RFS] plasmidseeker Nov 21
Re: [RFS] tortoize Nov 27
Re: [RFS] plasmidseeker Nov 21

Tony Travis

ORCA Nov 01
Re: ORCA Nov 03
Re: armhf regressions in a few packages Nov 22

Yaroslav Halchenko

mrtrix3 Nov 26
Re: mrtrix3 Nov 26

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