Re: /usr/bin/picard Re: bcbio will need another while - needs gatk

[Steffen Möller <steffen_moeller@gmx.de>]

On 14.11.20 20:18, Steffen Möller wrote:
> I presume you would be happy for me to put there a link from cnvkit.py
> (like bcbio expects it) to /usr/bin/cnvkit, right?

Update: I patched bcbio to find it. While looking at the source tree of
the cnvkit wrapper of bcbio I found that it references two BioConductor
packages that I hence put on the spreadsheet:

https://www.bioconductor.org/packages/release/bioc/html/TitanCNA.html
https://bioconductor.org/packages/release/bioc/html/PureCN.html

How are we with more R packages while the transition is happening?
Please ping me when you think I should address their packaging.

Best,

Steffen