Re: resfinder - test.fsa file missing for debian/tests/run-unit-test
Hi Steffen,
On Fri, Nov 27, 2020 at 11:20:24PM +0100, Steffen Möller wrote:
>
> routine-update could not install test.fsa - is that possibly just not
> uploaded to salsa?
It was part of the former upstream version. I've now moved this to
debian/tests/test.fsa.xz . I'd be more than happy if you could take
over from here and do the necessary since I'm basically AFK this
weekend.
BTW, delly is uploaded now. Thanks for pinging - feel free to sponsor
next time in case I might forget to upload something.
Kind regards
Andreas.
>
> moeller@steffen-laptop-debian:~/git/med-team/resfinder$ grep -ri test.fsa .
> ./debian/tests/run-unit-test:resfinder.py -i test.fsa -o . -p
> /usr/share/resfinder/db -d aminoglycoside -t 0.90 -l 0.60
> ./debian/resfinder-example.install:test.fsa
> usr/share/doc/resfinder/examples
> moeller@steffen-laptop-debian:~/git/med-team/resfinder$ git blame
> debian/tests/run-unit-test
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 1) #!/bin/bash
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 2) set -e
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 3)
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 4) pkg=resfinder
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 5)
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 6) export LC_ALL=C.UTF-8
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 7) if [
> "${AUTOPKGTEST_TMP}" = "" ] ; then
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 8)
> AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
> 8f57c464 (Andreas Tille 2019-11-15 13:02:23 +0100 9) trap "rm -rf
> ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 10) fi
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 11)
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 12) cp -a
> /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 13)
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 14) cd
> "${AUTOPKGTEST_TMP}"
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 15)
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 16) gunzip -r *
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 17)
> 0340013a (Andreas Tille 2019-11-15 12:54:38 +0100 18) resfinder.py -i
> test.fsa -o . -p /usr/share/resfinder/db -d aminoglycoside -t 0.90 -l 0.60
>
>
>
--
http://fam-tille.de
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