debian-med Jul 2022 by author

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Bálint Réczey

Re: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 21

Étienne Mollier

Re: GCC-12 bugs became RC - some low hanging fruits remaining + one or two harder ones Jul 26
variability in TRANSIT test_resampling* sig_qvals Jul 12
Re: spades: truspades command deprecation since v3.15 Jul 24
ITP: abpoa -- adaptive banded Partial Order Alignment Jul 09
Bug#1016128: RM: edfbrowser [s390x] -- ROM; upstream only supports little endian Jul 27
Re: spades: truspades command deprecation since v3.15 Jul 24
spades: truspades command deprecation since v3.15 Jul 24
Re: GCC-12 bugs became RC - some low hanging fruits remaining + one or two harder ones Jul 25
Re: Bug#1014647: ITP: abpoa -- adaptive banded Partial Order Alignment Jul 11

Moritz Mühlenhoff

Re: Bug#1015978: Should falcon be removed? Jul 29

Aaron M. Ucko

Re: Finishing ncbi-vdb and sra-sdk Jul 28
Re: Finishing ncbi-vdb and sra-sdk Jul 27
Re: igblast accepted - how can it be used to test igdiscover Jul 31
Re: [Help] unifrac-tools: symbol `_ZTVN2H511IdComponentE' can not be used when making a shared object; recompile with -fPIC Jul 27

Andreas Tille

Debian Med video conference in preparation of Debian Science BoF next Thursday 2022-06-21 18:00 UTC Jul 17
Re: CMake help needed for tiddit Jul 26
Re: Upgrading invesalius Jul 19
Finishing ncbi-vdb and sra-sdk Jul 27
Re: Finishing ncbi-vdb and sra-sdk Jul 27
Re: Upgrading dssp, cif-tools, density-fitness and others Jul 19
Re: Added autopkgtest for zalign Jul 21
Re: Naming scheme of fis-gtm binary packages (Was: Bug#1009900: fis-gtm: Multiple CVEs in fis-gtm) Jul 12
Re: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 21
Re: Bug#1015978: Should falcon be removed? Jul 24
Re: CMake help needed for tiddit Jul 26
Re: Naming scheme of fis-gtm binary packages (Was: Bug#1009900: fis-gtm: Multiple CVEs in fis-gtm) Jul 30
[Help] unifrac-tools: symbol `_ZTVN2H511IdComponentE' can not be used when making a shared object; recompile with -fPIC Jul 27
Re: [Help] unifrac-tools: symbol `_ZTVN2H511IdComponentE' can not be used when making a shared object; recompile with -fPIC Jul 27
CMake help needed for tiddit Jul 26
Re: GCC-12 bugs became RC - some low hanging fruits remaining + one or two harder ones Jul 26
Re: q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.10 returned exit code 13 Jul 20
Re: Debian Med video conference in preparation of Debian Science BoF next Thursday 2022-07-21 18:00 UTC Jul 17
Upgrading dssp, cif-tools, density-fitness and others Jul 19
Re: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 20
Re: Upgrading invesalius Jul 20
Re: Upgrading invesalius Jul 20
Re: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 20
igblast accepted - how can it be used to test igdiscover Jul 30
Re: Upgrading invesalius Jul 28
GCC-12 bugs became RC - some low hanging fruits remaining + one or two harder ones Jul 25
Upgrading invesalius Jul 19
Re: Finishing ncbi-vdb and sra-sdk Jul 28
Re: Naming scheme of fis-gtm binary packages (Was: Bug#1009900: fis-gtm: Multiple CVEs in fis-gtm) Jul 29
[Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 20
Re: Bug#1015585: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 20
Re: Finishing ncbi-vdb and sra-sdk Jul 29
Re: RFS : disable tests for dicomnifti on s390,i386 (#1013364) Jul 20

Andrius Merkys

Re: rdflib: URLInputSource can be abused to retrieve arbitrary documents if used naïvely Jul 31

Debian Bug Tracking System

Bug#1014344: marked as done (ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code) Jul 22

Frith, Martin

Re: suggesting dnarrange and lamassemble Jul 11
Re: suggesting dnarrange and lamassemble Jul 11
Re: suggesting dnarrange and lamassemble Jul 11
Re: suggesting dnarrange and lamassemble Jul 11
Re: suggesting dnarrange and lamassemble Jul 11

Karsten Hilbert

Re: Naming scheme of fis-gtm binary packages (Was: Bug#1009900: fis-gtm: Multiple CVEs in fis-gtm) Jul 29

Maarten L. Hekkelman

Re: Upgrading dssp, cif-tools, density-fitness and others Jul 19

Mathieu Malaterre

Re: Added autopkgtest for biomaj3-cli,gdcm Jul 04

Mattia Rizzolo

Mohd Bilal

Added autopkgtest for zalign Jul 21
Added autopkgtest for biomaj3-cli,gdcm Jul 04
Re: Added autopkgtest for biomaj3-cli,gdcm Jul 07
Added autopkgtest for rockhopper Jul 14
Added autopkgtest for emmax Jul 20
Added autopkgtests for megadepth Jul 11
RFS : disable tests for dicomnifti on s390,i386 (#1013364) Jul 20

Nilesh Patra

RFH: porting bolt-lmm Jul 31
Re: suggesting dnarrange and lamassemble Jul 11
Re: Added autopkgtest for biomaj3-cli,gdcm Jul 07
Re: q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.10 returned exit code 13 Jul 19
Bug#1016197: RM: tiddit [s390x] -- ROM; Depends on python3-pysam which is unavailable on s390x Jul 29
Bug#1014695: RM: nanopolish [s390x] -- ROM; nanopolish transitively depends on streamvbyte which does not build on s390x Jul 10
Re: Added autopkgtests for megadepth Jul 11
Re: rdflib: URLInputSource can be abused to retrieve arbitrary documents if used naïvely Jul 31
Re: suggesting dnarrange and lamassemble Jul 11
Re: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 20
Re: Added autopkgtest for emmax Jul 20
Re: We should do an update of all qiime2 modules as soon as possible (Was: Bug#1014100: qiime: autopkgtest needs update for new version of python-decorator) Jul 05
Re: suggesting dnarrange and lamassemble Jul 11
Re: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 20
Re: CMake help needed for tiddit Jul 26
Re: [Help] Re: Bug#1015585: plast: ftbfs with LTO (link time optimization) enabled Jul 20
Re: suggesting dnarrange and lamassemble Jul 11
Re: spades: truspades command deprecation since v3.15 Jul 24
Re: suggesting dnarrange and lamassemble Jul 11
Re: CMake help needed for tiddit Jul 26
Re: Added autopkgtest for rockhopper Jul 14
Re: Added autopkgtest for biomaj3-cli,gdcm Jul 04

Pierre Gruet

Bug#1014344: ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code Jul 04
Re: milib moved to gradle build system - help needed Jul 01
Bug#1016046: ITP: genomicsdb -- sparse array storage library for genomics Jul 25
sight failing to build Jul 29
Re: CMake help needed for tiddit Jul 26

Shah, Amul

Re: Naming scheme of fis-gtm binary packages (Was: Bug#1009900: fis-gtm: Multiple CVEs in fis-gtm) Jul 11

Thiago Franco de Moraes

tony mancill

Re: milib moved to gradle build system - help needed Jul 01

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