Re: [Help] unifrac-tools: symbol `_ZTVN2H511IdComponentE' can not be used when making a shared object; recompile with -fPIC
Andreas Tille <andreas@an3as.eu> writes:
> h5c++ -shared -fopenmp -o libssu.so tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 -llapacke -lblas -L/lib
> /usr/bin/ld: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.a(H5Exception.o): warning: relocation against `_ZTVN2H518DataTypeIExceptionE' in read-only section `.text'
> /usr/bin/ld: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.a(H5IdComponent.o): relocation R_X86_64_PC32 against symbol `_ZTVN2H511IdComponentE' can not be used when making a shared object; recompile with -fPIC
Please try arranging to add -shlib to the h5c++ command line to override
that script's preference for static HDF5 libraries.
--
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu
Reply to: