Bug#1014344: ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code

To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: Bug#1014344: ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code
From: Pierre Gruet <pgt@debian.org>
Date: Mon, 04 Jul 2022 17:22:05 +0200
Message-id: <[🔎] 165694812547.8633.11659551363958286077.reportbug@mendelssohn>
Reply-to: Pierre Gruet <pgt@debian.org>, 1014344@bugs.debian.org

Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : gatk-bwamem
  Version         : 1.0.4
  Upstream Author : Broad Institute
* URL             : https://github.com/broadinstitute/gatk-bwamem-jni/
* License         : BSD-3-Clause
  Programming Lang: Java
  Description     : interface to call Heng Li's bwa mem aligner from Java code

BWA (Burrows-Wheeler Aligner) is a software package for mapping low-divergent
sequences against a large reference genome, such as the human genome. It is
written in C.

gatk-bwamem provides a Java library and a shared library to allow one to use
BWA from Java code.

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- Bug#1014344: marked as done (ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code)
  - From: "Debian Bug Tracking System" <owner@bugs.debian.org>

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