Bug#1014344: marked as done (ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code)
Your message dated Fri, 22 Jul 2022 19:10:10 +0000
with message-id <E1oEy2M-000CWo-Tr@fasolo.debian.org>
and subject line Bug#1014344: fixed in gatk-bwamem 1.0.4+dfsg2-1
has caused the Debian Bug report #1014344,
regarding ITP: gatk-bwamem -- interface to call Heng Li's bwa mem aligner from Java code
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1014344: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1014344
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org
* Package name : gatk-bwamem
Version : 1.0.4
Upstream Author : Broad Institute
* URL : https://github.com/broadinstitute/gatk-bwamem-jni/
* License : BSD-3-Clause
Programming Lang: Java
Description : interface to call Heng Li's bwa mem aligner from Java code
BWA (Burrows-Wheeler Aligner) is a software package for mapping low-divergent
sequences against a large reference genome, such as the human genome. It is
written in C.
gatk-bwamem provides a Java library and a shared library to allow one to use
BWA from Java code.
--- End Message ---
--- Begin Message ---
Source: gatk-bwamem
Source-Version: 1.0.4+dfsg2-1
Done: Pierre Gruet <pgt@debian.org>
We believe that the bug you reported is fixed in the latest version of
gatk-bwamem, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1014344@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <pgt@debian.org> (supplier of updated gatk-bwamem package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 06 Jul 2022 12:28:41 +0200
Source: gatk-bwamem
Binary: libgatk-bwamem-java libgatk-bwamem-jni libgatk-bwamem-jni-dbgsym
Architecture: source all amd64
Version: 1.0.4+dfsg2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Pierre Gruet <pgt@debian.org>
Description:
libgatk-bwamem-java - interface to call Heng Li's bwa mem aligner from Java code
libgatk-bwamem-jni - interface to call Heng Li's bwa mem aligner from Java code (jni)
Closes: 1014344
Changes:
gatk-bwamem (1.0.4+dfsg2-1) unstable; urgency=medium
.
* Initial release (Closes: #1014344)
Checksums-Sha1:
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c27d5ad7ee506407448891b75f3d155bd795dd47 21360 gatk-bwamem_1.0.4+dfsg2.orig.tar.xz
f244f57a24e9d496013c9970c161e17b22967174 10152 gatk-bwamem_1.0.4+dfsg2-1.debian.tar.xz
7b8ba12cb821a417b4c02422908742f7f0b09674 11767 gatk-bwamem_1.0.4+dfsg2-1_amd64.buildinfo
8d37594fe2658466fea181366c6b3ac75b55c8b1 23312 libgatk-bwamem-java_1.0.4+dfsg2-1_all.deb
b5733304134dbcd5eb4b3688961692d720ed3227 212976 libgatk-bwamem-jni-dbgsym_1.0.4+dfsg2-1_amd64.deb
2fa6e551d5f3f955dda61b73b5d36338bd5da0b4 91064 libgatk-bwamem-jni_1.0.4+dfsg2-1_amd64.deb
Checksums-Sha256:
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767c56d136ab24f1fc0511b4a5dcf927ba0028fa140c61e97da10dd57291d798 21360 gatk-bwamem_1.0.4+dfsg2.orig.tar.xz
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Files:
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ed2b395e5416b1bf2b6902acedd61c80 21360 java optional gatk-bwamem_1.0.4+dfsg2.orig.tar.xz
bde3bb3a17a8cf93a590b9441a098ff2 10152 java optional gatk-bwamem_1.0.4+dfsg2-1.debian.tar.xz
9eb023d58e332453bf135c1419dff476 11767 java optional gatk-bwamem_1.0.4+dfsg2-1_amd64.buildinfo
78e0bac475fb3ea66199b0124c18af1f 23312 java optional libgatk-bwamem-java_1.0.4+dfsg2-1_all.deb
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--- End Message ---
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