[Help] unifrac-tools: symbol `_ZTVN2H511IdComponentE' can not be used when making a shared object; recompile with -fPIC

[Andreas Tille <andreas@an3as.eu>]

Hi,

the new version of package unifrac needs unifrac-tools.  I've tried to build this
package[1] but it fails with:

h5c++ -shared -fopenmp -o libssu.so tree.o biom.o unifrac_internal.o unifrac_cmp_cpu.o unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 -llapacke -lblas -L/lib
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.a(H5Exception.o): warning: relocation against `_ZTVN2H518DataTypeIExceptionE' in read-only section `.text'
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.a(H5IdComponent.o): relocation R_X86_64_PC32 against symbol `_ZTVN2H511IdComponentE' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: bad value

Any idea how to fix this?

Kind regards

     Andreas.


[1] https://salsa.debian.org/med-team/unifrac-tools/-/jobs/3039267

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