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Re: Outreachy project: complete workflows of tools

On 07/03/2021 23:47, Tassia Camoes Araujo wrote:
Hi all,

On 2021-03-05 11:09, Tassia Camoes Araujo wrote:
Since deadline is approaching quickly, I suggest we move this off-list
and start writing in a wiki or pad.

Here is my first draft, pasted below for your reference, but you can
edit the text directly in this pad:

Help needed to write the Intern tasks section. Also, please check if you
have better scientific articles to recommend and list a few tools to be
used in the starter tasks.

Please help shaping this proposal so it ***really*** makes sense and
attract interns ;-)

Hi, Tassia.

I recommend using "flexbar", which I use, instead of "Trimmomatic":


Also, depending on the sequencing technology used, consider assembling short-paired-end reads with e.g. Pear:




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