Re: Java packaging in Debian med [Was : Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run] ]
On Tue, Aug 25, 2020 at 04:37:37PM +0200, Pierre Gruet wrote:
> >> I get this right, then also nextflow qualifies, which because of
> >> "capsule" seems kind of stuck.
>
> Thanks, I will populate the tab. I already have access to the file.
Nice.
> > Thanks to Pierre we are close to snpeff. Cytoscape is another very nice
> > thing to have as well as gatk. Having this in Debian 11 would be a real
> > advantage.
>
> BTW, snpeff depends on akka-actor, a (Scala+Java) library which still
> has to be packaged, and I am afraid it will be blocked by the version of
> Scala in Debian, itself being stuck to 2.11 as Scala build tool (SBT)
> requires work. I shall document all this in the spreadsheet!
Did you talked about the needed Scala with Debian Java team? I
remember there was some work under way for sbt which was stalled.
If you want me to revive this discussion I can try to catch up.
Kind regards
Andreas.
--
http://fam-tille.de
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