debian-med Aug 2020 by thread
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Re: About Snpeff packaging (Was : Re: Attributions concern for aparapi (currently in NEW))
Pierre Gruet
Re: About Snpeff packaging (Was : Re: Attributions concern for aparapi (currently in NEW))
Andreas Tille
Re: Please list your contributions to COVID-19 sprint as intput for my DebConf20 talk
Sao I Kuan
<Possible follow-ups>
Re: Please list your contributions to COVID-19 sprint as intput for my DebConf20 talk
Nilesh Patra
Re: Please list your contributions to COVID-19 sprint as intput for my DebConf20 talk
Pranav Ballaney
[RFS] python-ncls
Nilesh Patra
Re: [RFS] python-ncls
Andreas Tille
Request for a sponsored upload of fast5-research
Shayan Doust
Re: Request for a sponsored upload of fast5-research
Andreas Tille
Re: Request for a sponsored upload of fast5-research
Shayan Doust
Re: Request for a sponsored upload of fast5-research
Nilesh Patra
Re: Request for a sponsored upload of fast5-research
Shayan Doust
Re: Request for a sponsored upload of fast5-research
Shayan Doust
Re: Request for a sponsored upload of fast5-research
Nilesh Patra
Re: Request for a sponsored upload of fast5-research
Andreas Tille
RFS: probabel and jmodeltest
Pranav Ballaney
Re: RFS: probabel and jmodeltest
Andreas Tille
Re: RFS: probabel and jmodeltest
Pranav Ballaney
Re: RFS: probabel and jmodeltest
Aaron M. Ucko
Re: Import of debian med packages metadata to Tools Platform Ecosystem
Hervé Ménager
[RFS] kalign
Nilesh Patra
Re: [RFS] kalign
Andreas Tille
[RFS] parsinsert
Gleisson Jesuino Joauqim Cardoso
Re: [RFS] parsinsert
Andreas Tille
RFS: castxml 0.3.4-2 - bumped build-dep to llvm 10
Étienne Mollier
Re: RFS: castxml 0.3.4-2 - bumped build-dep to llvm 10
Andreas Tille
RFS : snap
Pierre Gruet
Re: RFS : snap
Andreas Tille
RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Andreas Tille
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Gert Wollny
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Steven Robbins
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Gert Wollny
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Karsten Hilbert
Re: RFS: Bug#957360: insighttoolkit4: ftbfs with GCC-10
Étienne Mollier
Re: Videoconference Friday 2020-07-31 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))
Andreas Tille
Videoconference Friday 2020-08-14 18:00 UTC (Was: For those who want to keep on contributing (Was: Debian @ COVID-19 Biohackathon (April 5-11, 2020))
Andreas Tille
RF peer review/help/sponsoring: seqcluster
Steffen Möller
Re: RF peer review/help/sponsoring: seqcluster
Andreas Tille
Re: RF peer review/help/sponsoring: seqcluster
Steffen Möller
Re: RF peer review/help/sponsoring: seqcluster
Andreas Tille
Re: RF peer review/help/sponsoring: seqcluster
Steffen Möller
Re: RF peer review/help/sponsoring: seqcluster
Andreas Tille
[RFS] quicktree
Nilesh Patra
RFS: rdp-readseq
Pranav Ballaney
Re: RFS: rdp-readseq
Andreas Tille
Re: ampliconnoise openmpi issue in autopkgtest
Pranav Ballaney
Re: ampliconnoise openmpi issue in autopkgtest
Andreas Tille
[RFS] psychopy
Nilesh Patra
Re: [RFS] psychopy
Andreas Tille
fix for #966470: biobambam2 autopkgtest failures
Étienne Mollier
Re: fix for #966470: biobambam2 autopkgtest failures
Steffen Möller
Re: fix for #966470: biobambam2 autopkgtest failures
Étienne Mollier
Re: fix for #966470: biobambam2 autopkgtest failures
Steffen Möller
Re: fix for #966470: biobambam2 autopkgtest failures
Étienne Mollier
Re: fix for #966470: biobambam2 autopkgtest failures
Steffen Möller
Re: fix for #966470: biobambam2 autopkgtest failures
Étienne Mollier
<Possible follow-ups>
Re: fix for #966470: biobambam2 autopkgtest failures
John Marshall
Re: fix for #966470: biobambam2 autopkgtest failures
Étienne Mollier
Re: [Debian-med-packaging] Bug#966470: fix for #966470: biobambam2 autopkgtest failures
Étienne Mollier
libgclib - symbol file - please kindly educate me
Steffen Möller
Re: libgclib - symbol file - please kindly educate me
Andreas Tille
Re: libgclib - symbol file - please kindly educate me
Alex Mestiashvili
Re: libgclib - symbol file - please kindly educate me
Steffen Möller
Re: libgclib - symbol file - please kindly educate me
Alex Mestiashvili
Re: libgclib - symbol file - please kindly educate me
Steffen Möller
[RFS] wtdbg2
Nilesh Patra
Re: [RFS] wtdbg2
Andreas Tille
Orthanc and all its plugins are getting removed from testing
Sébastien Jodogne
Re: Orthanc and all its plugins are getting removed from testing
Sébastien Jodogne
[RFS] phipack
Nilesh Patra
Re: [RFS] phipack
Steffen Möller
[RFS] repeatmasker-recon
Nilesh Patra
How to handle patches during a routine update ?
Charles Plessy
Re: How to handle patches during a routine update ?
Michael Crusoe
Re: How to handle patches during a routine update ?
Andreas Tille
RFS : daligner
Shruti Sridhar
Re: RFS : daligner
Andreas Tille
Re: RFS : daligner
Shruti Sridhar
Re: RFS : daligner
Nilesh Patra
damapper for sponsored upload
Shayan Doust
Re: damapper for sponsored upload
Andreas Tille
[RFS] libdistlib-java
Pierre Gruet
Re: [RFS] libdistlib-java
Andreas Tille
Re: semi-RFS: xenium - good enough for me (at the moment)
Pranav Ballaney
Sepp has build issued (Was: semi-RFS: xenium - good enough for me (at the moment))
Andreas Tille
Re: Sepp has build issued (Was: semi-RFS: xenium - good enough for me (at the moment))
Pierre Gruet
Re: Sepp has build issued (Was: semi-RFS: xenium - good enough for me (at the moment))
Andreas Tille
Re: Sepp has build issued (Was: semi-RFS: xenium - good enough for me (at the moment))
Pierre Gruet
Re: Sepp has build issued (Was: semi-RFS: xenium - good enough for me (at the moment))
Andreas Tille
[RFS] volpack
Nilesh Patra
Re: [RFS] volpack
Steffen Möller
Re: Please review biosquid [Was: ansgar@debian.org: Re: [Help] pvm: ftbfs with GCC-10]
Andreas Tille
[Help] Re: seqan autopkg test failures triggered by gcc-defaults
Andreas Tille
Re: [Help] Re: seqan autopkg test failures triggered by gcc-defaults
Michael Crusoe
Re: [Help] Re: seqan autopkg test failures triggered by gcc-defaults
Andreas Tille
Re: [Help] Re: seqan autopkg test failures triggered by gcc-defaults
Aaron M. Ucko
Re: [Help] Re: seqan autopkg test failures triggered by gcc-defaults
Michael Crusoe
[RFS] scythe
Nilesh Patra
Re: [RFS] scythe
Andreas Tille
Third Debian Med COVID-19 hackathon (August 16-22, 2020)
Andreas Tille
[RFS] seqmagick
Nilesh Patra
RFH: dukpy - Copyright statement for vendored and modified code
Sao I Kuan
Re: RFH: dukpy - Copyright statement for vendored and modified code
MJ Ray
Re: RFH: dukpy - Copyright statement for vendored and modified code
Ángel
Advice needed for python3 package (shasta)
Shayan Doust
Re: Advice needed for python3 package (shasta)
Aaron M. Ucko
Re: Advice needed for python3 package (shasta)
Shayan Doust
[RFS] murasaki
Nilesh Patra
Re: [RFS] murasaki
Andreas Tille
[COVID-19 Hackathon] Bazel build system pending NEW
Olek Wojnar
Re: [COVID-19 Hackathon] Bazel build system pending NEW
Mo Zhou
Re: [COVID-19 Hackathon] Bazel build system pending NEW
Olek Wojnar
Re: [COVID-19 Hackathon] Bazel build system pending NEW
Michael R. Crusoe
[RFS] pycoqc
Nilesh Patra
RFS: dukpy [ITP]
Sao I Kuan
Re: RFS: dukpy [ITP]
Andreas Tille
Preparing for data and workflow testing
Steffen Möller
[RFS] radiant
Nilesh Patra
Re: [RFS] radiant
Andreas Tille
Fwd: Re: could You please mail us web-hosting compare link?
John
[RFS] nitime
Nilesh Patra
Re: [RFS] nitime
Steffen Möller
[RFS] stringtie
Nilesh Patra
Re: [RFS] stringtie
Andreas Tille
RFS: bio-rainbow
Pranav Ballaney
Re: RFS: bio-rainbow (+maffilter)
Andreas Tille
RFS: maffilter
Pranav Ballaney
RFS: damapper and dascrubber
Shruti Sridhar
Re: RFS: damapper and dascrubber
Andreas Tille
Re: RFS: damapper and dascrubber
Shayan Doust
Re: RFS: damapper and dascrubber
Shayan Doust
Re: RFS: damapper and dascrubber
Andreas Tille
Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Rebecca N. Palmer
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Drew Parsons
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Andreas Tille
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Graham Inggs
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Rebecca N. Palmer
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Rebecca N. Palmer
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Rebecca N. Palmer
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Andreas Tille
Re: Should the pandas 1.x transition be forced (breaking python-biom-format and q2-demux/q2-types) or keep waiting?
Rebecca N. Palmer
libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js
Steffen Möller
Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js
Andreas Tille
Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js
Steffen Möller
merge request opened Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js
Steffen Möller
pigx-rnaseq Re: merge request opened Re: libjs-jquery-datatables-extensions: pandoc needs vfs_fonts.js
Steffen Möller
RFS: rampler
Pranav Ballaney
Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run]
Pierre Gruet
Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run]
Andreas Tille
Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run]
Pierre Gruet
Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run]
Steffen Möller
Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run]
Andreas Tille
Java packaging in Debian med [Was : Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run] ]
Pierre Gruet
Re: Java packaging in Debian med [Was : Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run] ]
Steffen Möller
Re: Java packaging in Debian med [Was : Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run] ]
Andreas Tille
Re: Java packaging in Debian med [Was : Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run] ]
Pierre Gruet
Re: Java packaging in Debian med [Was : Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run] ]
Andreas Tille
[RFS] centrifuge
Nilesh Patra
Re: [RFS] centrifuge
Steffen Möller
Re: VIP
Tony Travis
Re: VIP
Steffen Möller
Re: VIP
Tony Travis
[RFS] tnseq-transit
Nilesh Patra
Re: [RFS] tnseq-transit
Steffen Möller
Debian Med BoF recording at DebConf20 is online
Andreas Tille
Review package treerecs?
David Parsons
[RFS] harvest-tools
Nilesh Patra
Re: [RFS] harvest-tools
Andreas Tille
Closer look at PiGx scRNA-seq
Steffen Möller
RFS: r-bioc-singlecellexperiment
Steffen Möller
pigx-rnaseq fails cowbuilder Fwd: Bug#968944 closed by Debian FTP Masters <ftpmaster@ftp-master.debian.org> (reply to Andreas Tille <tille@debian.org>) (Bug#968944: fixed in datatables-extensions 0.0+git20150910.28fd64e+dfsg-4)
Steffen Möller
Re: Bug#845113: scala 2.12 released. Please upload version 2.12 ASAP into debian sid, so that it integrates into debian stable 9 stretch
Pierre Gruet
RFS: r-bioc-genomicfiles
Steffen Möller
[RFS] sigma-align
Nilesh Patra
Re: [RFS] sigma-align
Steffen Möller
Re: [RFS] sigma-align
Nilesh Patra
[RFS] sweed
Nilesh Patra
Re: [RFS] sweed
Andreas Tille
Falcon -> misc updates
Steffen Möller
networkx 2.5 Re: Falcon -> misc updates
Steffen Möller
[RFS] python-pymummer
Nilesh Patra
Re: [RFS] python-pymummer
Steffen Möller
RFS: pbdagcon
Pranav Ballaney
[RFS] gmap
Nilesh Patra
Re: [RFS] gmap
Steffen Möller
Sponsored upload for shasta
Shayan Doust
Re: Sponsored upload for shasta
Steffen Möller
[RFS] pychopper
Nilesh Patra
Paris 2021 conferene
Sorbonne
[RFS] oscar
Nilesh Patra
Re: [RFS] oscar
Steffen Möller
Short Introduction
Andrei Rozanski
Re: Short Introduction
Andreas Tille
Anybody up for Python3 port of pbgenomicconsensus? [jmm@inutil.org: Re: pbgenomicconsensus: Python2 removal in sid/bullseye]
Andreas Tille
The last update was on 21:20 GMT Mon Aug 31. There are 209 messages. Page 1 of 1.
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