Re: Java packaging in Debian med [Was : Re: [benjamin.redelings@gmail.com: Bug#968739: igv will not run] ]
On 25.08.20 16:37, Pierre Gruet wrote:
> Le 25/08/2020 à 06:35, Andreas Tille a écrit :
>> On Tue, Aug 25, 2020 at 12:12:04AM +0200, Steffen Möller wrote:
>>> I created a "Java" tab on our spreadsheet. Would of course be great if
>>> that sees some momentum. Took the freedom to also add Cytoscape. And if
>>> I get this right, then also nextflow qualifies, which because of
>>> "capsule" seems kind of stuck.
> Thanks, I will populate the tab. I already have access to the file.
>
>> Thanks to Pierre we are close to snpeff. Cytoscape is another very nice
>> thing to have as well as gatk. Having this in Debian 11 would be a real
>> advantage.
>>
> BTW, snpeff depends on akka-actor, a (Scala+Java) library which still
> has to be packaged, and I am afraid it will be blocked by the version of
> Scala in Debian, itself being stuck to 2.11 as Scala build tool (SBT)
> requires work. I shall document all this in the spreadsheet!
We need more helping hands as the remaining tasks are now of an
increased difficulty but at the same time these should be also of
interest for Debian at large.
Best,
Steffen
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