Re: Hmmer2 fork / enhancements (Was: Is my post making it to the mailing list?)

To: Joshua Marshall <jrmarsha@mtu.edu>
Cc: Debian Med Project List <debian-med@lists.debian.org>
Subject: Re: Hmmer2 fork / enhancements (Was: Is my post making it to the mailing list?)
From: Andrius Merkys <andrius.merkys@gmail.com>
Date: Fri, 11 Jan 2019 11:09:11 +0200
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Hello,

On 2019-01-11 04:42, Joshua Marshall wrote:
> Does anyone on this list have an interest or use case for Hmmer2?  I'd like to put a pin in this.

I have been using programs from hmmer Debian packages (3.0 and 3.1, I guess) in a pipeline for protein structure prediction some three years ago. I could share my pipeline (Makefile + some scripts, ultimately feeding multiple alignment to 'modeller') if needed.

Best,
Andrius

-- 
Andrius Merkys
Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325
LT-10257 Vilnius, Lithuania

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