[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Re: test mismatches expected output in signalp 4.1c



Hello,

I didn't get any response to this message of mine from last May. There
are two points there: one is the output of the test suite and the other
is the request to consider less restrictive licensing.

Thanks and regards
Afif

على الخميس  5 أيار 2016 ‫15:25، كتب Afif Elghraoui:
> Hello,
> I ran the tests on my copy of signalp 4.1c and the output does not 
> exactly match the expected output for two cases. I'm not sure whether 
> the differences are significant, but here are the results from my test 
> run anyway:
> 
> afif@saam:~/sysadmin/alborz/apps/signalp$ make -k -f debian/tests/Makefile
> signalp -t euk -f short test/euk10.fsa | diff -u test/euk10.fsa.short_out -
> signalp -t euk -f long test/euk10.fsa | diff -u test/euk10.fsa.long_out -
> --- test/euk10.fsa.long_out    2013-01-04 03:27:22.000000000 -0800
> +++ -    2016-05-05 15:07:26.697420248 -0700
> @@ -744,7 +744,7 @@
>      45   D   0.110   0.113   0.270
>      46   Y   0.098   0.115   0.251
>      47   E   0.100   0.116   0.250
> -   48   D   0.100   0.111   0.244
> +   48   D   0.101   0.111   0.244
>      49   Y   0.106   0.117   0.244
>      50   A   0.099   0.112   0.228
>      51   S   0.096   0.111   0.218
> debian/tests/Makefile:8: recipe for target 'euk10.fsa.long_out' failed
> make: *** [euk10.fsa.long_out] Error 1
> signalp -t euk -f all test/euk10.fsa | diff -u test/euk10.fsa.all_out -
> --- test/euk10.fsa.all_out    2013-01-04 03:23:57.000000000 -0800
> +++ -    2016-05-05 15:07:27.307406112 -0700
> @@ -764,7 +764,7 @@
>   45       D    0.110    0.113    0.109    0.113    0.109
>   46       Y    0.098    0.115    0.100    0.119    0.109
>   47       E    0.100    0.116    0.101    0.120    0.111
> -48       D    0.100    0.111    0.103    0.114    0.112
> +48       D    0.101    0.111    0.103    0.114    0.112
>   49       Y    0.106    0.117    0.105    0.116    0.114
>   50       A    0.099    0.112    0.101    0.116    0.114
>   51       S    0.096    0.111    0.099    0.115    0.112
> debian/tests/Makefile:8: recipe for target 'euk10.fsa.all_out' failed
> make: *** [euk10.fsa.all_out] Error 1
> signalp -t euk -f summary test/euk10.fsa | diff -u 
> test/euk10.fsa.summary_out -
> 
> 
> My operating system is Debian 8. Do you think this discrepancy would 
> cause any problems? Also, I was wondering whether you would consider 
> less restrictive licensing. That would allow for redistribution in 
> platforms like Debian and give your program greater exposure to users 
> and contributors.
> 
> Many thanks and regards
> Afif
> 


Reply to: