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Re: GSOC [Continuous Integration for all biological applications inside Debian]



Hello Andreas,

I made contact with PyloPthias article maintainer as u said and he said he will make contact the main developer (and be pleased about it :) ) to make program codes more understandable and packable for debian standarts. 
I made contact with them 2 days ago wait response for now.

I look at some documentations and packages you advised me (fastqc, exonerate, seaview, gubbins, swarm-cluster, dindel, murasaki) but there is some clearness i came across you advise these packages to me for example or making test suites and what we are testing ? Are we test the packages for succesfully building and installing or functionality. 
I look exonerate etc. and couldn't find any debian/tests directory i am confused.

In conclusion i understanded i must study more about it and i can use MoM for help . Thank you for help.

Best Regards

2016-03-23 0:29 GMT+02:00 Andreas Tille <andreas@an3as.eu>:
Hi Canberk,

On Wed, Mar 23, 2016 at 12:01:30AM +0200, Canberk Koç wrote:
> I have to give you a little update i'm reading policy, join alioth page and
> have no problem in that subject but

Fine. :-)

> i  have a problem on packaging
> PhyloPythiaS
> program.
> Program have no source code in its github repository, in article they said
> it's an GPL 3  licensed program but in license file they mentioned it is
> not a free software with another license in attachment and i confused about
> it .

I wonder whether you like to try your luck with contacting the authors.
I'm pretty sure you will find examples how to do so if you do a web
search for the terms:

    site:lists.debian.org/debian-med "Im writing you on the behalf of the Debian Med team"

This is one of the (boring) parts of package maintenance but its a vital
part and why not starting with this?

> Can you suggest me another package i can work on it. Thanks for your
> help.

fastqc, exonerate, seaview, gubbins, swarm-cluster, dindel, murasaki

These are just random picks - take one you might have hear of before.

Hope this helps

     Andreas.

--
http://fam-tille.de




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