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Re: [MoM] ProbABEL packaging



On 11-12-13 21:34, Andreas Tille wrote:
> Hi Lennart,
> 
> just commit+push your patch and I'll check.

Done!


Lennart.

> 
> Kind regards
> 
>        Andreas.
> 
> On Wed, Dec 11, 2013 at 05:10:01PM +0100, L.C. Karssen wrote:
>> Hi Andreas,
>>
>> On 11-12-13 11:15, Andreas Tille wrote:
>>> Hi Lennart,
>>>
>>>
>>>> 2) 2x W: probabel: script-with-language-extension
>>>>         This is something we discuss upstream. One of them can be fixed
>>>> relatively easily, I think. The other one may interfere too much with
>>>> what users currently expect/existing workflows. My feeling is that
>>>> removing the extension will require a major version jump and good
>>>> communication with the users/their sysadmins.
>>>
>>
>> For the extIDS.pl file I would like to solve the problem by installing
>> it in the examples directory (that's where it actually belongs, it's not
>> required for regular use) instead of /usr/bin/. To this end I want to
>> patch the src/Makefile.am file, which I would then send upstream.
>>
>> I've set up dquilt according to sections 3.1 and 3.2 of
>> http://www.debian.org/doc/manuals/maint-guide/modify.en.html.
>> Next I took the following steps (as outlined in the URL):
>>   dquilt new fix-extIDS.pl.patch
>>   dquilt add src/Makefile.am
>>  <edit src/Makefile.am>
>>   dquilt refresh
>>   dquilt header -e
>>  <edit patch info>
>>
>> However, neither debuild, nor pdebuild seems to pick up the patch. The
>> patch itself seems ok:
>>
>> $ less debian/patches/fix-extIDS.pl.patch
>> Description: Fix Makefile.am to install extIDS.pl in a more correct location
>>  This patch will be sent upstream.
>> Forwarded: TODO
>> Author: Lennart C. Karssen <lennart@karssen.org>
>> Last-Update: 2013-12-11
>>
>> +++ b/src/Makefile.am
>> @@ -75,11 +75,11 @@
>>  extract_snp_SOURCES = extract-snp.cpp $(FVSRC) $(FVHEADERS)
>>
>>  ## Install these scripts in the bin directory as well:
>> -dist_bin_SCRIPTS = probabel.pl extIDS.pl
>> +dist_bin_SCRIPTS = probabel.pl
>>
>> -## Install this R script in the examples directory
>> +## Install these scripts in the examples directory
>>  scriptdir = $(pkgdatadir)/scripts
>> -dist_script_DATA = prepare_data.R
>> +dist_script_DATA = prepare_data.R extIDS.pl
>>
>>  ## Install the config file
>>  dist_sysconf_DATA = probabel_config.cfg.example
>>
>>
>> Any suggestions?
>>
>> Thanks,
>>
>> Lennart.
>>
>> --
>> *-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
>> L.C. Karssen
>> Utrecht
>> The Netherlands
>>
>> lennart@karssen.org
>> http://blog.karssen.org
>> GPG key ID: A88F554A
>> -*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-
>>
> 
> 
> 

-- 
*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*
L.C. Karssen
Utrecht
The Netherlands

lennart@karssen.org
http://blog.karssen.org
GPG key ID: A88F554A
-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-*-

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