Re: Flexbar source code?
On Tue, Jan 22, 2013 at 10:52:59AM +0000, Tony Travis wrote:
> >For the tarball itself I have two remarks:
> >
> > 2. A really large part of the source tarball is a convenience copy of
> > the seqan library which is also packages in seqan-dev package.
> > Usually we try strongly to build packages against Debian packaged
> > libraries and thus I would be very happy if we could drop the
> > seqan code (by at the same time tweaking src/CMakeLists.txt to
> > regard the Debian packaged seqan.) Unfortunately the included
> > copy has some indifferent state - it is way younger than the latest
> > official seqan release (1.3.1) which is packaged. So the question
> > remains whether flexbar will really build with Debian's seqan
> > package. It is the duty of the Debian maintainer of flexbar to
> > find this out (either by testing himself or by asking upstream.)
>
> I've discussed this with Johannes already off-list, and I was able
> to compile his source release unmodified on Bio-Linux 7/Ubuntu 12.04
> LTS.
OK, lets see how things evolve regarding the seqan library. BTW, I will
consider changing the packaging of seqan anyway because it does not fit
the usual packaging scheme of libraries (but that's post Wheezy release
work.)
Kind regards and thanks for your work on flexbar
Andreas.
--
http://fam-tille.de
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