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Re: Conflict between R 4.5 and some (mostly r-bioc 3.20) R packages



On 22/04/2025 18:14, Rebecca N. Palmer wrote:
The failing r-cran-rlang test was already known to be unsuitable for R 4.5+, and upstream have simply removed it

That works in Debian: https://salsa.debian.org/rnpalmer-guest/r-cran-rlang/-/jobs/7476674

That makes the current status

r-bioc-iranges, r-bioc-graph, r-cran-rlang: have Salsa merge requests with fixes. The r-bioc-iranges patch should also fix r-bioc-delayedmatrixstats but this has not actually been tested.

r-cran-hdf5r, r-cran-rcmdcheck, r-cran-s2: need tests disabling on a 32-bit architecture (and if you prefer not to have buggy packages available, the package removing on this architecture). This will unblock r-cran-testthat and hence r-cran-ff. (These are *already* buggy in R 4.4.x, but the old r-cran-testthat was too buggy to notice.)

r-bioc-bioccheck: needs explicit version check disabling.

r-bioc-pwalign, r-bioc-shortread: unknown - maybe the r-bioc-iranges patch will also fix these, maybe not.

r-cran-pillar: no action required, already fixed in r-cran-bit64.


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