Hi Paul,
On Fri, Jul 19, 2019 at 08:59:16AM +0200, Paul Klemm wrote:
> I tested it and everything works how i expect it to be.s
Thanks a lot for testing.
> But there is one
> problem: please include a link to all the binaries, e.g.
> proteinortho_grab_proteins.pl is often used after a proteinortho call.
Is this true for all those files currently in
/usr/lib/proteinortho/
Than we can move them right to /usr/bin. (For some reason I assumed
that these would be small helpers only but if users expect all files in
their PATH these should be there.)
> Also I am just curious: How long does it take for a package to go from
> unstable to stable?
Debian stable has the name *stable* since there is usually *no*
migration of new code. Thus proteinortho will be released in its than
latest version with the next Debian release which will be Debian 11 -
probably in about two years. Since this is probably not what you want
for your users we provide backports[1] to stable at request. But users
need to include those backports in their souces.list. So what we should
do right now is:
1. Fix the location of files (please answer above)
2. Wait until proteinortho has migrated to testing
3. Upload to buster-backports
BTW, I'm always CCing debian-med@lists.debian.org and I'd prefer if you
would send your questions to this public list as well since we are a
team and there are chances that I fail to answer private mails.
> Thank you very much, Paul
You are welcome
Andreas.
[1] https://backports.debian.org/
> On Wed, Jul 17, 2019 at 4:26 PM Andreas Tille <andreas@an3as.eu> wrote:
>
> > Hi Paul,
> >
> > On Wed, Jul 17, 2019 at 03:30:49PM +0200, Paul Klemm wrote:
> > > I would like to test the package but i cannot find proteinortho 6.0.6
> > > neither with apt-get install nor apt-cache search. Or is it too early?
> >
> > New packages are uploaded to Debian unstable. You need to add this to
> > your sources.list (but be carefully and set your apt_preferences
> > properly - otherwise the system tries to upgrade your whole system to
> > unstable!) Or you download from here:
> >
> > https://tracker.debian.org/pkg/proteinortho
> >
> > and install it manually.
> >
> > Hope this helps
> >
> > Andreas.
> >
> > > On Tue, Jul 16, 2019 at 10:51 AM Andreas Tille <andreas@an3as.eu> wrote:
> > >
> > > > Hi Paul,
> > > >
> > > > On Tue, Jul 16, 2019 at 08:59:14AM +0200, Paul Klemm wrote:
> > > > > Hey Andreas,
> > > > > Sorry for the confusion, I was not aware of any rules.
> > > >
> > > > No problem to sort things out. :-)
> > > >
> > > > > And thank you very
> > > > > much for your time and effort.
> > > >
> > > > You are welcome. It would help if you could test the package and
> > report
> > > > any issue you might face.
> > > >
> > > > Kind regards
> > > >
> > > > Andreas.
> > > >
> > > > > Kind regards, Paul
> > > > >
> > > > > On Mon, Jul 15, 2019 at 8:52 PM Andreas Tille <tille@debian.org>
> > wrote:
> > > > >
> > > > > > Hi Paul,
> > > > > >
> > > > > > On Sat, Jul 13, 2019 at 05:06:05PM +0200, Andreas Tille wrote:
> > > > > > > If you talk about a PR the source is probably on some Git
> > repository
> > > > > > > (which I'm not aware about). Please let me know the Git
> > repository
> > > > > > > and if there is a release tag it accordingly (we usually do not
> > > > > > > package random commits or pull requests).
> > > > > >
> > > > > > I've now understood that you created a clone of the packaging
> > > > repository
> > > > > > in salsa and tried to upgrade the packaging. I admit I just copied
> > > > your
> > > > > > work in the debian/ dir and commited this to the packaging
> > repository.
> > > > > > I really appreciate your intend to help, but there are some rules
> > > > > > specified in Debian Med team policy[1] which are simplifying the
> > > > > > maintenance in the team. You are happily invited to be guided into
> > > > > > these rules. Otherwise it might be easier if you simply ping here
> > on
> > > > > > the list that some new upstream version is out. Usually its a
> > quite
> > > > > > automatic process to upgrade (but the proteinortho 6.x series was
> > > > hidden
> > > > > > for our tools since the download location had changed - this kind
> > of
> > > > > > change is very important to know for the packaging).
> > > > > >
> > > > > > Kind regards and thanks for your effort in any case
> > > > > >
> > > > > > Andreas.
> > > > > >
> > > > > > [1] https://med-team.pages.debian.net/policy/
> > > > > >
> > > > > > --
> > > > > > http://fam-tille.de
> > > > > >
> > > > > >
> > > > >
> > > > > --
> > > > > Paul Klemm
> > > > > Department of Pharmaceutical Chemistry
> > > > > Philipps-University Marburg
> > > > > Marbacher Weg 6, 35037 Marburg, Germany
> > > > > Phone: +49 (0)6421 28 22870
> > > > > Mobile: +49 (0)178 1387867
> > > >
> > > > --
> > > > http://fam-tille.de
> > > >
> > > >
> > >
> > > --
> > > Paul Klemm
> > > Department of Pharmaceutical Chemistry
> > > Philipps-University Marburg
> > > Marbacher Weg 6, 35037 Marburg, Germany
> > > Phone: +49 (0)6421 28 22870
> > > Mobile: +49 (0)178 1387867
> >
> > --
> > http://fam-tille.de
> >
> >
>
> --
> Paul Klemm
> Department of Pharmaceutical Chemistry
> Philipps-University Marburg
> Marbacher Weg 6, 35037 Marburg, Germany
> Phone: +49 (0)6421 28 22870
> Mobile: +49 (0)178 1387867
--
http://fam-tille.de