Suspect bug in javahelper (Was: Problems building latest version of htsjdk)

[Andreas Tille <andreas@an3as.eu>]

Hi Olivier,

On Tue, Sep 18, 2018 at 03:16:07PM +0200, Andreas Tille wrote:
>  
> I now know where to look for other ftp/http access attempts (there are way
> more.)

I've now worked down all remote access tests in htsjdk and thought I would
be through all hassle but now I'm facing the following:


   debian/rules override_jh_installlibs
make[1]: Entering directory '/build/htsjdk-2.16.1+dfsg'
jh_installlibs --version-strip='[+]dfsg[.0-9]*'
jh_installlibs: copy(build/libs/htsjdk-*.jar, debian/libhtsjdk-java/usr/share/java/htsjdk-*-2.16.1.jar): No such file or directory
        install -d debian/libhtsjdk-java/usr/share/java
        install -p -m0644 build/libs/htsjdk-\*.jar debian/libhtsjdk-java/usr/share/java/htsjdk-\*-2.16.1.jar
make[1]: *** [debian/rules:22: override_jh_installlibs] Error 2


The overide in d/rules is:

override_jh_installlibs:
	jh_installlibs --version-strip='[+]dfsg[.0-9]*'

and

$ cat debian/*jlibs
build/libs/htsjdk-*.jar


Inside the pbuilder chroot it looks like this:

/build/htsjdk-2.16.1+dfsg# ls build/libs/htsjdk-*.jar
build/libs/htsjdk-2.16.1.jar
/build/htsjdk-2.16.1+dfsg# ls debian/libhtsjdk-java/usr/share/java/
/build/htsjdk-2.16.1+dfsg# cp -a build/libs/htsjdk-\*.jar debian/libhtsjdk-java/usr/share/java/htsjdk-\*-2.16.1.jar
cp: cannot stat 'build/libs/htsjdk-*.jar': No such file or directory


I tried to get rid of the override in d/rules but the result is the same:


   jh_installlibs -O--buildsystem=gradle
jh_installlibs: copy(build/libs/htsjdk-*.jar, debian/libhtsjdk-java/usr/share/java/htsjdk-*-2.16.1+dfsg.jar): No such file or directory
        install -d debian/libhtsjdk-java/usr/share/java
        install -p -m0644 build/libs/htsjdk-\*.jar debian/libhtsjdk-java/usr/share/java/htsjdk-\*-2.16.1\+dfsg.jar
make: *** [debian/rules:12: binary] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2


I could work around this by simply overriding jh_installlibs by a copy
statement but I'd love to avoid this kind of hacks.

Any idea what might be wrong here?

Kind regards

      Andreas.

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