Re: [Debian-med-packaging] Problems building latest version of htsjdk
On 09/17/2018 05:36 PM, Andreas Tille wrote:
> On Mon, Sep 17, 2018 at 04:55:50PM +0200, Olivier Sallou wrote:
>> I can't find any git update on salsa for htsjdk (last update 1 month
>> ago), forgot to push?
> Ups, please check again.
better, but getting errors:
...
gbp:info: Creating /opt/debian/build-area/htsjdk_2.16.1+dfsg.orig.tar.xz
gbp:error: Error creating htsjdk_2.16.1+dfsg.orig.tar.xz: Pristine-tar
couldn't checkout "htsjdk_2.16.1+dfsg.orig.tar.xz": fatal: Path
'htsjdk_2.16.1+dfsg.orig.tar.xz.delta' does not exist in
'refs/heads/pristine-tar'
>
> BTW, regarding picard-tools.
>
> The patch
>
> --- build.gradle
> +++ build.gradle
> @@ -68,13 +64,14 @@
> exclude module: 'htsjdk'
> }
> compile 'com.google.guava:guava:15.0'
> + compile 'org.broadinstitute:gatk-native-bindings:debian'
> compile 'com.github.samtools:htsjdk:' + htsjdkVersion
> compile 'org.broadinstitute:barclay:2.0.0'
> compileOnly googleNio
>
> // javadoc utilities; compile/test only to prevent redistribution of sdk jars
>
>
> did not applied. It seemed to me that upstream found some replacement.
> I also tried adding it with no change of the issue.
>
> Kind regards
>
> Andreas.
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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