Re: [Debian-med-packaging] Problems building latest version of htsjdk

[Andreas Tille <andreas@an3as.eu>]

On Mon, Sep 17, 2018 at 04:55:50PM +0200, Olivier Sallou wrote:
> I can't find any git update on salsa for htsjdk (last update 1 month
> ago), forgot to push?

Ups, please check again.

BTW, regarding picard-tools.

The patch

--- build.gradle
+++ build.gradle
@@ -68,13 +64,14 @@
         exclude module: 'htsjdk'
     }
     compile 'com.google.guava:guava:15.0'
+    compile 'org.broadinstitute:gatk-native-bindings:debian'
     compile 'com.github.samtools:htsjdk:' + htsjdkVersion
     compile 'org.broadinstitute:barclay:2.0.0'
     compileOnly googleNio

     // javadoc utilities; compile/test only to prevent redistribution of sdk jars


did not applied.  It seemed to me that upstream found some replacement.
I also tried adding it with no change of the issue.

Kind regards

       Andreas.

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