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Re: psortb, libalgorithm-svm-perl, and other missing dependencies

Hi Carnë,

On Tue, Jul 25, 2017 at 04:22:07PM +0100, Carnë Draug wrote:
> >
> > These tests are ran against the installed package and not during the
> > build.  I just call autopkgtest with the changes file after the
> > build.  The setup instructions are on the pkg-perl page [1]
> >
> > Carnë
> >
> > [1] https://pkg-perl.alioth.debian.org/autopkgtest.html#SETUP
> I went to try and fix this and found some missing dependencies which
> are still not packaged in Debian.
> One is an Apache module which I have no idea where it comes from.  It
> is used on the server startup.pl [2].
> Another is XML::RPC [3] which is also not packaged in Debian.
> Then there is Bio::PSort::ModuleI [4] which is not part of their
> release.  I think they probably meant to use
> Bio::Tools::PSort::ModuleI instead.
> In addition, I got a bunch of redefined symbols and 'my $variables'
> masking previous declarations warnings.
> I didn't look any further than this, other issues may pop up after
> fixing those.

Thanks a lot for your investigation.  It is really appreciated since
I'm currently quite flooded with work.

> I tried to push one change but I don't have push access to debian-med
> repositories.

I've added you to the Debian Med team so you should be able to push.

Thanks once more

> [2] https://anonscm.debian.org/cgit/debian-med/psortb.git/tree/psort/server/startup.pl
> [3] https://anonscm.debian.org/cgit/debian-med/psortb.git/tree/lib/Bio/Tools/PSort/XMLRPC/Client.pm
> [4] https://anonscm.debian.org/cgit/debian-med/psortb.git/tree/lib/Bio/Tools/PSort/Module/InputI.pm#n58


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