Re: psortb, libalgorithm-svm-perl, and other missing dependencies
On Tue, Jul 25, 2017 at 04:22:07PM +0100, Carnë Draug wrote:
> > These tests are ran against the installed package and not during the
> > build. I just call autopkgtest with the changes file after the
> > build. The setup instructions are on the pkg-perl page 
> > Carnë
> >  https://pkg-perl.alioth.debian.org/autopkgtest.html#SETUP
> I went to try and fix this and found some missing dependencies which
> are still not packaged in Debian.
> One is an Apache module which I have no idea where it comes from. It
> is used on the server startup.pl .
> Another is XML::RPC  which is also not packaged in Debian.
> Then there is Bio::PSort::ModuleI  which is not part of their
> release. I think they probably meant to use
> Bio::Tools::PSort::ModuleI instead.
> In addition, I got a bunch of redefined symbols and 'my $variables'
> masking previous declarations warnings.
> I didn't look any further than this, other issues may pop up after
> fixing those.
Thanks a lot for your investigation. It is really appreciated since
I'm currently quite flooded with work.
> I tried to push one change but I don't have push access to debian-med
I've added you to the Debian Med team so you should be able to push.
Thanks once more
>  https://anonscm.debian.org/cgit/debian-med/psortb.git/tree/psort/server/startup.pl
>  https://anonscm.debian.org/cgit/debian-med/psortb.git/tree/lib/Bio/Tools/PSort/XMLRPC/Client.pm
>  https://anonscm.debian.org/cgit/debian-med/psortb.git/tree/lib/Bio/Tools/PSort/Module/InputI.pm#n58