Re: Packaging wishlist for this week's H3Africa workshop

[Andreas Tille <andreas@an3as.eu>]

Status update.

On Mon, Aug 22, 2016 at 05:42:26PM +0200, Michael Crusoe wrote:
> One more: snpeff http://snpeff.sourceforge.net/download.html

I'm interested but will not be able to do anything about this before my
vacation.  Everybody who intends to start is perfectly welcome.

> > I'm at the H3Abionet Cloud computing hackathon this week in Pretoria,
> > South Africa.
> >
> > http://www.h3abionet.org/training-and-education/h3abionet-courses/17-
> > h3abionet-courses/h3abionet-courses-upcoming/266-
> > h3abionet-cloud-computing-hackathon
> >
> > The resulting CWL tools and workflow descriptions will be contributed in
> > real time to the community repository: https://github.
> > com/common-workflow-language/workflows
> >
> > It would be super nice if I could get assistance making Debian packages of
> > the following so we don't abuse Docker as a package manager :-)
> >
> > metagenomeSeq https://bioconductor.org/packages/release/bioc/html/
> > metagenomeSeq.html

In new since 3 weeks - so might be available soon.

> > phloseq https://github.com/joey711/phyloseq

In new since some hours - so will be available at some point in time.

> > bamstats http://bamstats.sourceforge.net/

Another Java beast with included JARs.  In contrast to snpeff its not on
my personal agenda so I'm not sure whether I can help here.  I guess it
does not make a lot of work once it is packaged since there are no
recent changes visible in this project.

Kind regards

     Andreas.

-- 
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