Status update.
On Mon, Aug 22, 2016 at 05:42:26PM +0200, Michael Crusoe wrote:
> > I'm at the H3Abionet Cloud computing hackathon this week in Pretoria,
> > South Africa.
> >
> > http://www.h3abionet.org/training-and-education/ h3abionet-courses/17-
> > h3abionet-courses/h3abionet-courses-upcoming/266- In new since 3 weeks - so might be available soon.
> > h3abionet-cloud-computing-hackathon
> >
> > The resulting CWL tools and workflow descriptions will be contributed in
> > real time to the community repository: https://github.
> > com/common-workflow-language/workflows
> >
> > It would be super nice if I could get assistance making Debian packages of
> > the following so we don't abuse Docker as a package manager :-)
> >
> > metagenomeSeq https://bioconductor.org/packages/release/bioc/html/
> > metagenomeSeq.html
> > phloseq https://github.com/joey711/phyloseq
In new since some hours - so will be available at some point in time.
> > bamstats http://bamstats.sourceforge.net/
Another Java beast with included JARs. In contrast to snpeff its not on
my personal agenda so I'm not sure whether I can help here. I guess it
does not make a lot of work once it is packaged since there are no
recent changes visible in this project.