$FASTAREMOVE $INPUTFILE CALM_HUMAN(ARGUMENT PART) > $OUTPUTFILE
Upper test fails because upstream package have a little bug in test.sh. There must be >CALM_HUMAN for input argument but they forget ">" character :-)
fastaindex.fastafetch.test.sh line no: 34 $FASTAFETCH $INPUTFILE $INDEXFILE $IDENTIFIER line no:52 run_fastafetch A_MISSING_FROM_START 1 run_fastafetch M_MISSING_FROM_MIDDLE 1 run_fastafetch z_MISSING_FROM_END 1
Upper test fail because in source file it take an argument -1 for fail and in test.sh they use -1 parameter for showing fail situation. At these lines they test for what program act when there is a missing part in fasta file so test working correct actually :-) if you need more info i can show c.file line numbers too .
Now what we do for correct these mistakes :)
Actually hints give me some ideas but i am struggling with understanding what is wrong. Package do these tests in building by itself no problem occurs but adt-run give 2 test failure though one test works once also :-) I look at build log see some warnings about deprecated methods i'll gather all together and turn back to you.
www.about.me/canberkkoc26 May 2016 12:50 tarihinde "Andreas Tille" <email@example.com> yazdı:Hi Canberk,
since you did not sent any answer I assume the hints were helpful
enough. Is this assumption true?
On Tue, May 24, 2016 at 08:09:11AM +0200, Andreas Tille wrote:
> Hi Tanya,
> > ...
> thanks for your verbose and (without testing sounding) sensible input.
> On Tue, May 24, 2016 at 05:26:06AM +0300, merlettaia wrote:
> > Hope this helps.
> > Please, somebody correct me if my interpretation is wrong.
> Canberk, please let us know here if you need some further help or
> Kind regards