Re: Exonerate Test Failures

Hello Andreas(Tattiana and all)

Finally i manage to figure out what is wrong in tests.

At last resort i run tests manually and find out these results.

First:

fastaremove.test.sh
line no: 25

$FASTAREMOVE $INPUTFILE CALM_HUMAN(ARGUMENT PART) > $OUTPUTFILE

Upper test fails because upstream package have a little bug in test.sh. 
There must be >CALM_HUMAN for input argument but they forget ">" character :-)

fastaindex.fastafetch.test.sh

line no: 34
$FASTAFETCH $INPUTFILE $INDEXFILE $IDENTIFIER

line no:52
run_fastafetch A_MISSING_FROM_START 1
run_fastafetch M_MISSING_FROM_MIDDLE 1
run_fastafetch z_MISSING_FROM_END 1

Upper test fail because in source file it take an argument  -1 for fail and in test.sh they use -1 parameter for showing fail situation.
At these lines they test for what program act when there is a missing part in fasta file so test working correct actually :-) 
if you need more info i can show c.file line numbers too .

Now what we do for correct these mistakes :)

Best regards

Canberk Koç

about.me/canberkkoc

2016-05-26 13:10 GMT+03:00 Canberk Koç <canberkkoc@gmail.com>:

Hello Andreas,

Actually hints give me some ideas but i am struggling with understanding what is wrong. Package do these tests in building by itself no problem occurs but adt-run give 2 test failure though one test works once also :-) I look at build log see some warnings about deprecated methods i'll gather all together and turn back to you.

Best regards

Canberk Koç
www.about.me/canberkkoc

26 May 2016 12:50 tarihinde "Andreas Tille" <andreas@an3as.eu> yazdı:

Hi Canberk,

since you did not sent any answer I assume the hints were helpful
enough. Is this assumption true?

Kind regards

Andreas.

On Tue, May 24, 2016 at 08:09:11AM +0200, Andreas Tille wrote:
> Hi Tanya,
>
> > ...
>
> thanks for your verbose and (without testing sounding) sensible input.
>
> On Tue, May 24, 2016 at 05:26:06AM +0300, merlettaia wrote:
> > Hope this helps.
> > Please, somebody correct me if my interpretation is wrong.
>
> Canberk, please let us know here if you need some further help or
> testing.
>
> Kind regards
>
> Andreas.
>
> --
> http://fam-tille.de
>
>

--
http://fam-tille.de