I use adt-run to my autopkgtest on exonerate and examine the outputs.
I saw some failures but test run and give pass results.
I decide to look their test files and saw they look for missing files error not occur but failure output comes from main test file.
I take output for you i cannot understand what is wrong. Thanks for your help already.
tmp/autopkgtest.BK2zJD/adttmp/util/fastaremove.test.sh Have calmodulin in input ** FATAL ERROR **: Could not open list for removal [CALM_HUMAN] exiting ... Calmodulin successfully removed $FASTAREMOVE $INPUTFILE CALM_HUMAN > $OUTPUTFILE
//UPPER FAİL COMES FROM HERE BUT FUNCTİON WORK AND DELETE FİLES/tmp/autopkgtest.BK2zJD/adttmp/util/fastaindex.fastafetch.test.sh Made index fastafetch.test.idx /usr/bin/fastafetch fastafetch.test.fasta fastafetch.test.idx CALM_HUMAN expect 0 >CALM_HUMAN MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE EFVQMMTAK /usr/bin/fastafetch fastafetch.test.fasta fastafetch.test.idx P53_HUMAN expect 0 >P53_HUMAN MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGPDEAPRMPEAA PPVAPAPAAPTPAAPAPAPSWPLSSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKT CPVQLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGNLRVEYLDDRN TFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRNSFEVHVCACPGR DRRTEEENLRKKGEPHHELPPGSTKRALPNNTSSSPQPKKKPLDGEYFTLQIRGRERFEMFRELNEALEL KDAQAGKEPGGSRAHSSHLKSKKGQSTSRHKKLMFKTEGPDSD /usr/bin/fastafetch fastafetch.test.fasta fastafetch.test.idx A_MISSING_FROM_START expect 1 ** FATAL ERROR **: Could not find identifier [A_MISSING_FROM_START] (missing -F ?) exiting ... /usr/bin/fastafetch fastafetch.test.fasta fastafetch.test.idx M_MISSING_FROM_MIDDLE expect 1 ** FATAL ERROR **: Could not find identifier [M_MISSING_FROM_MIDDLE] (missing -F ?) exiting ... /usr/bin/fastafetch fastafetch.test.fasta fastafetch.test.idx z_MISSING_FROM_END expect 1 ** FATAL ERROR **: Could not find identifier [z_MISSING_FROM_END] (missing -F ?) exiting ... fastaindex fastafetch test OK # look for IDs which are missing run_fastafetch A_MISSING_FROM_START 1 run_fastafetch M_MISSING_FROM_MIDDLE 1 run_fastafetch z_MISSING_FROM_END 1
// UPPER FAİLS COMES FROM HERE BUT FETCHİNG WORKS
Best Regards
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