Re: Seeking for Java source code of org.bioinfo.*
Hi again,
Joaquin, did you found any person in your department that might have
some control about the source code in question? Please let me know
if you need further information.
Kind regards and have a nice Christmas
Andreas.
On Thu, Dec 17, 2015 at 08:03:09PM +0100, Andreas Tille wrote:
> Hi Joaquin,
>
> thanks for your quick response. However, it seems to be a
> misunderstanding. I know where to find qualimap and I wanted to build
> it from its sources to create a Debian package from it. However, the
> qualimap sources are not complete. We need to find the source code
> for the JARs that are inside the maven repository at
>
> http://repos.bioinfo.cipf.es/maven2/org/bioinfo/
>
> and our hope was that somebody at your department would be able to
> provide these. Konstantin (one of the authors of qualimap) was (and is)
> in CC. He also does not have any source code of org.bioinfo Java
> classes but we need these. Otherwise qualimap is not distributable by
> Debian at all since there is not even a license under that the JARs
> could be used.
>
> Any hint would be really appreciated
>
> Andreas.
>
> On Thu, Dec 17, 2015 at 07:01:06PM +0100, Joaquin Dopazo wrote:
> > Dear Andreas,
> > Thanks for your interest in qualimap. We are not supporting the software at
> > the CIPF any longer.
> > Try here: www.qualimap.org.
> > You can contact Fernando Garcia Alcalde, the leader of the project.
> > Best regards
> > Joaquin
> > El 17/12/2015 5:49 PM, "Andreas Tille" <andreas@an3as.eu> escribió:
> >
> > > ĄHola otra vez!
> > >
> > > Just picking some more e-mail addresses from the cipf.es website and try
> > > again. Anybody from the org.bioinfo authors please be so kind to respond.
> > >
> > > Kind regards
> > >
> > > Andreas.
> > >
> > > On Fri, Dec 11, 2015 at 09:30:21AM +0100, Andreas Tille wrote:
> > > > ĄHola Joaquin!
> > > >
> > > > I'm writing you on behalf of the Debian Med team that has the objective
> > > > to package all free software that is relevant in biology and medicine.
> > > > I have put Qualimap on our so called biology task page[1] where you can
> > > > see what we just have packaged and what we are working on.
> > > >
> > > > When I tried to package Qualimap I realised that it is using some
> > > > classes from a maven repository[2] where we did not found any Java
> > > > source code for. It seems the code was developed at your department[3]
> > > > and may be connected to a BMC publication[4].
> > > >
> > > > Could you be so kind to help us finding the source code that is
> > > > hopefully covered by a open source license to enable us to package it
> > > > for Debian and by doing so deliver it to a growing number of biologists
> > > > who are using Debian Med?
> > > >
> > > > Kind regards and thanks a lot for your support
> > > >
> > > > Andreas.
> > > >
> > > > [1] http://blends.debian.org/med/tasks/bio#qualimap
> > > > [2] http://repos.bioinfo.cipf.es/maven2/org/bioinfo/
> > > > [3] http://bioinfo.cipf.es/people
> > > > [4] http://www.biomedcentral.com/1471-2105/8/114/abstract
> > > >
> > > > --
> > > > http://fam-tille.de
> > > >
> > > >
> > >
> > > --
> > > http://fam-tille.de
> > >
>
> --
> http://fam-tille.de
--
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