Regards,I will work on changing the setup.py and make this into a +dfsg package, but was wondering why the difference.which is different from what you get.Hi Andreas,If I run lintian with -i -I I get this:
vagrant@debian:~/deb-alioth/current/pysam_packaging/python-pysam$ lintian -i -I ../python3-pysam_0.8.1-1_amd64.deb
I: python3-pysam: hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/TabProxies.cpython-34m-x86_64-linux-gnu.so
N:
N: This package provides an ELF binary that lacks the use of fortified libc
N: functions. Either there are no potentially unfortified functions called
N: by any routines, all unfortified calls have already been fully validated
N: at compile-time, or the package was not built with the default Debian
N: compiler flags defined by dpkg-buildflags. If built using
N: dpkg-buildflags directly, be sure to import CPPFLAGS.
N:
N: NB: Due to false-positives, Lintian ignores some unprotected functions
N: (e.g. memcpy).
N:
N: Refer to https://wiki.debian.org/Hardening and
N: http://bugs.debian.org/673112 for details.
N:
N: Severity: normal, Certainty: wild-guess
N:
N: Check: binaries, Type: binary, udeb
N:
I: python3-pysam: spelling-error-in-binary usr/lib/python3/dist-packages/pysam/calignmentfile.cpython-34m-x86_64-linux-gnu.so explicitely explicitly
N:
N: Lintian found a spelling error in the given binary. Lintian has a list
N: of common misspellings that it looks for. It does not have a dictionary
N: like a spelling checker does.
N:
N: If the string containing the spelling error is translated with the help
N: of gettext or a similar tool, please fix the error in the translations
N: as well as the English text to avoid making the translations fuzzy. With
N: gettext, for example, this means you should also fix the spelling
N: mistake in the corresponding msgids in the *.po files.
N:
N: You can often find the word in the source code by running:
N:
N: grep -rw <word> <source-tree>
N:
N: This tag may produce false positives for words that contain non-ASCII
N: characters due to limitations in strings.
N:
N: Severity: minor, Certainty: wild-guess
N:
N: Check: binaries, Type: binary, udeb
N:
I: python3-pysam: spelling-error-in-binary usr/lib/python3/dist-packages/pysam/calignmentfile.cpython-34m-x86_64-linux-gnu.so auxilliary auxiliary
I: python3-pysam: hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/calignmentfile.cpython-34m-x86_64-linux-gnu.so
I: python3-pysam: spelling-error-in-binary usr/lib/python3/dist-packages/pysam/ctabix.cpython-34m-x86_64-linux-gnu.so preceeding preceding
I: python3-pysam: hardening-no-fortify-functions usr/lib/python3/dist-packages/pysam/ctabix.cpython-34m-x86_64-linux-gnu.so
I: python3-pysam: spelling-error-in-binary usr/lib/python3/dist-packages/pysam/cvcf.cpython-34m-x86_64-linux-gnu.so tEH the
I: python3-pysam: extended-description-is-probably-too-short
N:
N: The extended description (the lines after the first line of the
N: "Description:" field) is only one or two lines long. The extended
N: description should provide a user with enough information to decide
N: whether they want to install this package, what it contains, and how it
N: compares to similar packages. One or two lines is normally not enough to
N: do this.
N:
N: Refer to Debian Developer's Reference section 6.2.1 (General guidelines
N: for package descriptions) and Debian Developer's Reference section 6.2.3
N: (The long description) for details.
N:
N: Severity: minor, Certainty: possible
N:
N: Check: description, Type: binary, udeb
N:
JorgeOn Sun, Dec 7, 2014 at 9:03 PM, Andreas Tille <andreas@an3as.eu> wrote:Hi Jorge,
On Sun, Dec 07, 2014 at 04:51:11PM +0000, Jorge Sebastião Soares wrote:
> > It looks like the pysam source package contains the source code for an
> > older samtools and tabix version.
> >
> Should I just turn this package into +dfsg, and implement dependency on the
> new samtools and tabix?
This would perfectly fit the Debian philosophy. If the test suite works
with the Debian packaged versions this would be really great.
Kind regards
Andreas.
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