Hi Andrius, On Mon, Jul 27, 2020 at 08:51:49AM +0300, merkys@debian.org wrote: > Hello, > > On 2020-07-27 08:38, tony mancill wrote: > >> It actually seems that org/openscience/cdk/smsd/Isomorphism is not > >> part of the currently packaged CDK. Any idea how to solve this? > > I am just starting to take a look a this, but I think we need to spend > > some more time with CDK. That class is found in the "legacy" directory > > of the sources: > > > > ➜ cdk-2.3.134.g1bb9a64587 find . -name Isomorphism.java > > ./legacy/src/main/java/org/openscience/cdk/smsd/Isomorphism.java > > > > But the legacy pom is ignored: > > > > https://salsa.debian.org/java-team/cdk/-/blob/master/debian/libcdk-java.poms#L91 > > Indeed, cdk-smsd pom is ignored (I made that so). However, if I remove > the '--ignore' instruction, the built jar is codeless: Based upon the sources layout, I wouldn't expect the cdk-smsd.pom in the root project to include that class anyway. > W: libcdk-java: codeless-jar usr/share/java/cdk-smsd.jar > > What is more, the subtree tool/smsd/ contains only pom.xml, what might > be the reason of codeless jar. It seems to me that cdk-smsd is legacy > now, and I would suggest asking the upstream for advice how to port code > depending on it. I still plan to take a look at what it would take to compile the legacy/pom.xml. Cheers, tony
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