Hi Andreas, On Sun, Jul 26, 2020 at 10:34:07AM +0200, Andreas Tille wrote: > Hi Andrius, > > On Fri, Jul 24, 2020 at 08:11:29AM +0300, merkys@debian.org wrote: > > On 2020-07-23 17:55, Andreas Tille wrote: > > > Would you mind to update cdk package (which was the original issue > > > I stumbled upon freehep)? > > > > I have updated cdk yesterday. The cdk-depict module is built now. > > Thanks a lot. Unfortunately I have remaining issues with r-cran-rcdk. > If I try to build it I get: > > > Executing test function test.mcs2 ... Error in .jcall("org.guha.rcdk.util.Misc", "Lorg/openscience/cdk/interfaces/IAtomContainer;", :. > java.lang.NoClassDefFoundError: org/openscience/cdk/smsd/Isomorphism > Timing stopped at: 0.022 0 0.007 > done successfully. > > > It actually seems that org/openscience/cdk/smsd/Isomorphism is not > part of the currently packaged CDK. Any idea how to solve this? I am just starting to take a look a this, but I think we need to spend some more time with CDK. That class is found in the "legacy" directory of the sources: ➜ cdk-2.3.134.g1bb9a64587 find . -name Isomorphism.java ./legacy/src/main/java/org/openscience/cdk/smsd/Isomorphism.java But the legacy pom is ignored: https://salsa.debian.org/java-team/cdk/-/blob/master/debian/libcdk-java.poms#L91 I'll look into the discrepancy with libjgrapht0.6-java, which doesn't include maven metadata. Cheers, tony
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