[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#964307: marked as done (ITP: golang-github-brentp-bix: Tabix file access with golang using biogo machinery (library))

Your message dated Fri, 10 Jul 2020 11:00:11 +0000
with message-id <E1jtqlH-000E21-2P@fasolo.debian.org>
and subject line Bug#964307: fixed in golang-github-brentp-bix 0.0~git20190718.00aa7a7+ds-1
has caused the Debian Bug report #964307,
regarding ITP: golang-github-brentp-bix: Tabix file access with golang using biogo machinery (library)
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
964307: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964307
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra <npatra974@gmail.com>
X-Debbugs-CC: debian-devel@lists.debian.org


* Package name    : golang-github-brentp-bix
  Version         : 0.0~git20190718.00aa7a7+ds-1
  Upstream Author : Brent Pedersen
* URL             : https://github.com/brentp/bix
* License         : Expat
  Programming Lang: Golang
  Description     : Tabix file access with golang using biogo machinery (library)

 Bixis a pure go tabix reader. Tabix has a minimum resolution of 16K
 bases. So, for dense annotations like ExAC, repeated queries will have to
 re-parse the same intervals. To mitigate this, Bix caches all annotations
 for the blocks from each query and re-uses them for later queries to
 the same block.  In practice, this results in 10X-100X speedup for any
 type of data.

I shall maintain this package.

--- End Message ---
--- Begin Message --- 
Source: golang-github-brentp-bix
Source-Version: 0.0~git20190718.00aa7a7+ds-1
Done: Nilesh Patra <npatra974@gmail.com>

We believe that the bug you reported is fixed in the latest version of
golang-github-brentp-bix, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 964307@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <npatra974@gmail.com> (supplier of updated golang-github-brentp-bix package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Sun, 05 Jul 2020 16:39:02 +0530
Source: golang-github-brentp-bix
Binary: golang-github-brentp-bix-dev
Architecture: source all
Version: 0.0~git20190718.00aa7a7+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Go Packaging Team <team+pkg-go@tracker.debian.org>
Changed-By: Nilesh Patra <npatra974@gmail.com>
Description:
 golang-github-brentp-bix-dev - Tabix file access with golang using biogo machinery (library)
Closes: 964307
Changes:
 golang-github-brentp-bix (0.0~git20190718.00aa7a7+ds-1) unstable; urgency=medium
 .
   * Initial release (Closes: #964307)
Checksums-Sha1:
 f315ae63e500b91923cea031141e6125e6f5adf5 2513 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1.dsc
 8dd3ce02b0ea05d4c4c99752f0ae5568942c271f 453340 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds.orig.tar.xz
 f8a78f6bebc28abf222c66cf3b164954d2160d53 3044 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1.debian.tar.xz
 774efced0344679ce0b35df11441bdefafcba5b6 7532 golang-github-brentp-bix-dev_0.0~git20190718.00aa7a7+ds-1_all.deb
 c9870a735660e3f4dec315139ed7f7bd3812f0df 7102 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1_amd64.buildinfo
Checksums-Sha256:
 db92d08bf55e52e3dfcb7c7f15217a5a4d3b26c4b439c41dd5714deef15be02a 2513 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1.dsc
 9b179c7df463e436f8e1f550f7a5cb34cd568e5a96b84e256f88c383a42aab81 453340 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds.orig.tar.xz
 7b8802d9f080498f3e44d38375f809a9b41cb8a31be1fbe7828c84902c854500 3044 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1.debian.tar.xz
 5bb3446dcab2e5230514e688ea1386c7f354fa949191ffe2151f4202ff106a53 7532 golang-github-brentp-bix-dev_0.0~git20190718.00aa7a7+ds-1_all.deb
 637221796160027050d6103d41bc2e93e4fb4c36f0274be67d865fa826a4edba 7102 golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1_amd64.buildinfo
Files:
 cc7b4cb888c2f2455bf4c462f0999f4d 2513 devel optional golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1.dsc
 722f388fa26b7835c2ad51d1cddf3a8f 453340 devel optional golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds.orig.tar.xz
 19e7bb714f14436031178263fb28748e 3044 devel optional golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1.debian.tar.xz
 8c1c09131ebcd009055b74e69b33b17f 7532 devel optional golang-github-brentp-bix-dev_0.0~git20190718.00aa7a7+ds-1_all.deb
 907be1913626ded154d89fb932f802a7 7102 devel optional golang-github-brentp-bix_0.0~git20190718.00aa7a7+ds-1_amd64.buildinfo

-----BEGIN PGP SIGNATURE-----
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=HnEM
-----END PGP SIGNATURE-----

--- End Message ---
Reply to: