Your message dated Fri, 10 Jul 2020 11:00:11 +0000 with message-id <E1jtqlH-000E2O-Im@fasolo.debian.org> and subject line Bug#964266: fixed in golang-github-brentp-irelate 0.0~git20180801.1bf7c8f+ds-1 has caused the Debian Bug report #964266, regarding ITP: golang-github-brentp-irelate: Streaming relation testing of sorted files of intervals to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner@bugs.debian.org immediately.) -- 964266: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964266 Debian Bug Tracking System Contact owner@bugs.debian.org with problems
--- Begin Message ---
- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: golang-github-brentp-irelate: Streaming relation testing of sorted files of intervals
- From: Nilesh Patra <npatra974@gmail.com>
- Date: Sat, 4 Jul 2020 23:49:16 +0530
- Message-id: <[🔎] CAJN192_je2xcXRn7fYBMHA=QNMOcy8cQ0Hi7cG0NXiMAWJBLUw@mail.gmail.com>
Package: wnpp
Severity: wishlist
Owner: Nilesh Patra <npatra974@gmail.com>X-Debbugs-CC: debian-devel@lists.debian.org* Package name : golang-github-brentp-irelate
Version : 0.0~git20180801.1bf7c8f+ds-1
Upstream Author : Brent Pedersen
* URL : https://github.com/brentp/irelate
* License : Expat
Programming Lang: GolangDescription : Streaming relation testing of sorted files of intervalsDescription: Streaming relation testing of sorted files of intervals
Helps to relate (e.g. intersect or by distance) sets of intervals.
For example, if the nearest gene to a set of ChIP-Seq peaks needs
to be reported, BEDTools does this extremely well, irelate is an
attempt to provide an API so that users can write their own tools
with little effort in go.
.
Performance irelate is quite fast, but use PIRelate for parallel
intersection. It is less flexible than irelate, but skips parsing of
database intervals for sparse regions in the query. In addition, it
has very good (automatic) parallelization.I shall maintain this package.
--- End Message ---
--- Begin Message ---
- To: 964266-close@bugs.debian.org
- Subject: Bug#964266: fixed in golang-github-brentp-irelate 0.0~git20180801.1bf7c8f+ds-1
- From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>
- Date: Fri, 10 Jul 2020 11:00:11 +0000
- Message-id: <E1jtqlH-000E2O-Im@fasolo.debian.org>
- Reply-to: Nilesh Patra <npatra974@gmail.com>
Source: golang-github-brentp-irelate Source-Version: 0.0~git20180801.1bf7c8f+ds-1 Done: Nilesh Patra <npatra974@gmail.com> We believe that the bug you reported is fixed in the latest version of golang-github-brentp-irelate, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 964266@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nilesh Patra <npatra974@gmail.com> (supplier of updated golang-github-brentp-irelate package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 02 Jul 2020 15:25:54 +0000 Source: golang-github-brentp-irelate Binary: golang-github-brentp-irelate-dev Architecture: source all Version: 0.0~git20180801.1bf7c8f+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Go Packaging Team <team+pkg-go@tracker.debian.org> Changed-By: Nilesh Patra <npatra974@gmail.com> Description: golang-github-brentp-irelate-dev - Streaming relation testing of sorted files of intervals Closes: 964266 Changes: golang-github-brentp-irelate (0.0~git20180801.1bf7c8f+ds-1) unstable; urgency=medium . * Initial release (Closes: #964266) Checksums-Sha1: 439972617d1d399067b41eb72fef3087975cf4fb 2511 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1.dsc f3583ad452e5488e201217a1cdf003074d425f6d 393876 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds.orig.tar.xz 8562175bdfade3698f12769b05b36d3eb985ff2e 1650096 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1.debian.tar.xz d6d214b565549b1ed37e9f11faab057ecf77adb0 4158212 golang-github-brentp-irelate-dev_0.0~git20180801.1bf7c8f+ds-1_all.deb c7cb77d160cea55c1d889c4ce7447a8e299765ee 7064 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1_amd64.buildinfo Checksums-Sha256: 2c7e3e5b9260ac120f73a878a973ab2645f53586d805e0815138e4794275bde0 2511 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1.dsc 0f33c5c3fdfe1ca3eb5f3917032e0f4f69e69441fcc5031e5cb0a2d1de6f9625 393876 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds.orig.tar.xz ed7abdce1c2c9186f3c64b2aee42459d96814850fd071f25b61081861162562d 1650096 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1.debian.tar.xz ff4c449490990f9d7d9c97827b5fd966aa3b30b29b0b858fce2271a9521381a7 4158212 golang-github-brentp-irelate-dev_0.0~git20180801.1bf7c8f+ds-1_all.deb de5a2018cad226dc71e3d1f7bb5a4ecfc9263f61fb603146891e09389d2de2da 7064 golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1_amd64.buildinfo Files: eab209b8bad03e801a650f68f08051f4 2511 devel optional golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1.dsc ed58eae0a655ea9ab83da1ac04f7f05c 393876 devel optional golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds.orig.tar.xz b1015f06fe13ea16f041d508b94827b7 1650096 devel optional golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1.debian.tar.xz af9284e9b68bb00c763a01d20df9f4aa 4158212 devel optional golang-github-brentp-irelate-dev_0.0~git20180801.1bf7c8f+ds-1_all.deb 6c0c9c930d62a26976d79312e8e735c2 7064 devel optional golang-github-brentp-irelate_0.0~git20180801.1bf7c8f+ds-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8DgoURHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEK2g/8CDXu1MhZLv/Co/iN/AMNs2bvV9rNPTGf cWYpPxPzEe89j6n1O5PI91C+kn0tMmX2PZ8jXG1iq2LD+FCt5wk4745BqWoPaTVY IlvLYIx7+jHYB2uthVqsihZMMAlwQJrOVE4ew6HbZQl+dYnqvU9RC3IaCwANsYJ5 QcbvfcRgZabEJiG4i5LgirD9EBrvsx+aUwzE2XVD8pZYon4e4i4G8JzvVSSxdBNA C7p938XVTpbdN7c2XrOCBRMjSgrHxNaDg4Lh/dVGriOfoPLKY8i5V3wTIUJPTB/b XZOlzXlDxrrJLZECHFuDRCFRT8she6rMoLrAYoNHcUCRPvtrsxBdjQU16gx++BmN ZVtyHRvDlPZqIFwAbKL1/qeXo42X97YSfl0oYQxm0nCiObI4cOIyGrlG6ZQIRR9j 9NQmo6V107k6+YbC0iX5wYJq5Eb/DyRTflvljsK76pGPocIBqCKQHo7LJB6x7UvH 1kNlYwJ1UdL1ae2BLD5FT35gAEjVsv9ZtECjHbt+3qlDVRJzjxy0MRnC+qSS68vm ljJccApDRiTNX3QsYIVmomFRTRRtfbV8HxmcsC9KldGUZ/cTM0w0gGJr+DeWp9KM Oxg8sdiAHiOuAnekNjTNvsjXRDtXEeJLgFwPjW8e0OZANvJ+VSypnSKkTsiDnWA4 yf/VfDHcjmk= =pYWQ -----END PGP SIGNATURE-----
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