[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#964307: ITP: golang-github-brentp-bix: Tabix file access with golang using biogo machinery (library)



Package: wnpp
Severity: wishlist
Owner: Nilesh Patra <npatra974@gmail.com>
X-Debbugs-CC: debian-devel@lists.debian.org


* Package name    : golang-github-brentp-bix
  Version         : 0.0~git20190718.00aa7a7+ds-1
  Upstream Author : Brent Pedersen
* URL             : https://github.com/brentp/bix
* License         : Expat
  Programming Lang: Golang
  Description     : Tabix file access with golang using biogo machinery (library)

 Bixis a pure go tabix reader. Tabix has a minimum resolution of 16K
 bases. So, for dense annotations like ExAC, repeated queries will have to
 re-parse the same intervals. To mitigate this, Bix caches all annotations
 for the blocks from each query and re-uses them for later queries to
 the same block.  In practice, this results in 10X-100X speedup for any
 type of data.

I shall maintain this package.

Reply to: