Bug#724280: ITP: rtax -- Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene
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Am 2013-11-21 17:19, schrieb Andreas Tille:
> Hi Simon,
>
> I have not seen the package in NEW any more and also I can not find
> a package with this name inside the pool. So it seems it has not
> passed ftpmasters check. Do you have some VCS with the packaging
> (or preferably might like to use Debian Med VCS)?
>
Hello!
Sorry for the delay, currently i have quite a lot to do.
After studying the Debian Med Policy, i have a questions:
Should i just import the upstream source into alioth, or just my
changes (eg /debian directory + patches)?
Sorry if this seems dumb, I don't want to screw things up.
I contacted upstream und he fixed the licensing issue ( added license
text to easier-to-find places), so it will hopefully make it into the
new queue.
Thank you.
Simon
> Kind regards
>
> Andreas.
>
> On Sun, Sep 29, 2013 at 08:37:40PM +0200, Andreas Tille wrote:
>> Hi Simon,
>>
>> On Sun, Sep 29, 2013 at 09:18:58AM +0200, Simon Kainz wrote:
>>> Thank you very much. My package is already in the NEW queue,
>>
>> Fine.
>>
>>> and after quickly inspecting the Debian Med Policy, i suspect i
>>> have to change some entries in the control file (at least) to
>>> make it compliant to the Debian Med Policy. So should I just
>>> reupload the package after applying my changes or should i wait
>>> for FTPMasters to either accept or reject the package. I just
>>> want to keep the work needed for the FTPMasters as small as
>>> possible, so maybe someone might give ma a hint as how to
>>> handle this.
>>
>> It's perfectly OK to wait for ftpmaster response and leave the
>> package in new as is. I have added rtax to the Debian Med bio
>> task as you can see on the according tasks page.[1]
>>
>>> Concerning packaging: For packaging itself, i think i don't
>>> need help- i already did some packaging work (for some local
>>> packages used ad work) and i have a very competent sponsor
>>> which helped me to create my packages.
>>
>> We do absolutely not want to disrupt your workflow / relation to
>> your sponsor. It is just an offer since in some cases it has
>> turned out to be hard to find a sponsor.
>>
>>> I will try to get my work into alioth/debian-med.
>>
>> That would be great and hopefully helpfull also for your work.
>>
>>> I will contact debian-med when I am getting stuck, so be
>>> prepared for some questions :-)
>>
>> That's what we are keen on. :-)
>>
>> Kind regards
>>
>> Andreas.
>>
>> [1] http://debian-med.alioth.debian.org/tasks/bio#rtax
>>
>>>> Am 28.09.2013 um 21:51 schrieb Andreas Tille
>>>> <andreas@an3as.eu>:
>>>>
>>>> Hi Simon,
>>>>
>>>> this package is a perfect target for Debian Med but I noticed
>>>> you are not yet a member of the Alioth team. Since I'm
>>>> currently on vaccation and not frequently online I just added
>>>> skainz-guest to the Debian Med team simply assuming you might
>>>> consider using Debian Med VCS as described in our team
>>>> policy[1]. I hope you agree with this and please let us know
>>>> if you need any help with the packaging.
>>>>
>>>> Kind regards
>>>>
>>>> Andreas.
>>>>
>>>> [1] http://debian-med.alioth.debian.org/docs/policy.html
>>>>
>>>>> On Mon, Sep 23, 2013 at 11:56:03AM +0200, Simon Kainz
>>>>> wrote: Package: wnpp Severity: wishlist Owner: Simon Kainz
>>>>> <simon@familiekainz.at>
>>>>>
>>>>> * Package name : rtax Version : 0.983 Upstream
>>>>> Author : David A. W. Soergel <David A. W. Soergel> * URL
>>>>> : David A. W. Soergel * License : BSD Programming
>>>>> Lang: Perl Description : Rapid and accurate taxonomic
>>>>> classification of short paired-end sequence reads from the
>>>>> 16S ribosomal RNA gene
>>>>>
>>>>> Short-read technologies for microbial community profiling
>>>>> are increasingly popular, yet previous techniques for
>>>>> assigning taxonomy to paired-end reads perform poorly. RTAX
>>>>> provides rapid taxonomic assignments of paired-end reads
>>>>> using a consensus algorithm.
>>>>>
>>>>> This tool is an optional dependency for qiime(which is
>>>>> already packaged) and it would be great to have it packaged
>>>>> for Debian.
>>>>>
>>>>> Regards,
>>>>>
>>>>> Simon
>>>>>
>>>>>
>>>>> -- To UNSUBSCRIBE, email to
>>>>> debian-devel-REQUEST@lists.debian.org with a subject of
>>>>> "unsubscribe". Trouble? Contact
>>>>> listmaster@lists.debian.org Archive:
>>>>> http://lists.debian.org/20130923095603.26061.18627.reportbug@zidpc9027.tu-graz.ac.at
>>>>
>>>>
>>>>>
- --
>>>> http://fam-tille.de
>>>
>>
>> -- http://fam-tille.de
>>
>>
>> -- To UNSUBSCRIBE, email to debian-med-REQUEST@lists.debian.org
>> with a subject of "unsubscribe". Trouble? Contact
>> listmaster@lists.debian.org Archive:
>> http://lists.debian.org/20130929183740.GA12433@an3as.eu
>>
>>
>
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