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re: apt-cache bin files getting corrupted

Check /etc/apt/sources.list on both machines. If you are using the uchicago mirrors for deb and deb-src, that's why this is happening. You want to switch to another set of mirrors since uchicago seems to have got itself corrupted. For a little while I had this problem too but cleared it up by switching to another set of mirrors and running apt-get update.

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