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suspending programs

 i usually run large simulations, and it happened sometimes power to go down 
suddenly, i don't know why.
 I have a UPS linked to my desktop (Debian Woody, 2.4.21), but i do not know how to 
suspend the simulation running while UPS keeps the pc on for a short time (10 minutes) before 
everything goes down.
 I'd like to restart my programs just at the same point where they have been 
 Any suggestions welcome.

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