Re: R package CI test failures
More fixes below:
On Thu, Apr 28, 2016 at 12:22:22AM +0200, Andreas Tille wrote:
> My only idea is to rather use
>
> pkg=r-bioc-`echo $oname | tr '[A-Z]' '[a-z]'`
>
> and so I try this even if I think this is equivalent.
This seems to work.
> > r-bioc-aroma.light: attempts install.packages
>
> I don't understand this one.
Understand and fixed in recent upload. The test is using princurve
which is not yet packaged (any volunteer?). I excluded those parts from
the test suite that try to load princurve from remote host.
> > r-bioc-biovizbase: non-lowercased path for vignette
> > r-bioc-bsgenome: non-lowercased path for vignette
>
> Waiting for confirmation that quotes in tr call are helpful.
Seems to work - so fixed in recent upload.
> > r-bioc-genomicalignments: min_overlap_score bug
I was able to fix this by adding a versioned dependency to
r-bioc-genomicranges. Will be uploaded soon.
Kind regards
Andreas.
--
http://fam-tille.de
Reply to: