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Bug#842177: marked as done (transition: hdf5)

Your message dated Tue, 24 Jan 2017 18:24:23 +0100
with message-id <ce2276e4-99c2-0144-6ee0-34f8746b4b49@debian.org>
and subject line Re: Bug#842177: transition: hdf5
has caused the Debian Bug report #842177,
regarding transition: hdf5
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
842177: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=842177
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: release.debian.org
Severity: normal
User: release.debian.org@packages.debian.org
Usertags: transition

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Hash: SHA256

Hi Release Team,

I hereby request a transition slot for hdf5 1.10 currently in experimental. This release ships major changes and has its soname bumped from 10 to 100.

Ben file:

title = "hdf5";
is_affected = .depends ~ /libhdf5.*-10([^0]|$)/ | .depends ~ /libhdf5.*-100/;
is_good = .depends ~ /libhdf5.*-100/;
is_bad = .depends ~ /libhdf5.*-10([^0]|$)/;


I've checked the build of every reverse dependencies. These few ones are of concern:
* libsis-jhdf5-java : unmaintained upstream - low popcon
* pytables : doesn't support new hdf5 API - popcon about 3000 - no reverse dependencies
* yorick-hdf5 : desing flaw - no support for 64bits integers - popcon about 300 - no reverse dependencies
* insighttoolkit4 : in progress; looking for a box with enough RAM - rather low popcon
* ants : in progress; build depends on insighttoolkit4 - raher low popcon

- From the above packages, the only real concern is pytables. A discussion is ongoing on debian-science@d.o, and I'm confident we'll find a solution before the Stretch freeze.


Full report:
===[ Dependency level 0 ]=====
hdf5:					binnmu OK
nanopolish:				binnmu OK
octave-communications:			binnmu OK
===[ Dependency level 1 ]=====
chemps2: hdf5				patch provided via #841954
field3d: hdf5				binnmu OK
freefem++: hdf5				binnmu OK
h5py: hdf5				binnmu OK
h5utils: hdf5				binnmu OK
hdf-eos5: hdf5				binnmu OK
ismrmrd: hdf5				patch provided via #841959
jhdf: hdf5				binnmu OK
libcgns: hdf5				binnmu OK
libgpiv: hdf5				patch provided via #841962
libmatio: hdf5				binnmu OK
libmstoolkit: hdf5			binnmu OK
libpdl-io-hdf5-perl: hdf5		patch provided via #841963
libsis-jhdf5-java: hdf5			KO hard coded hid_t as jint all over the source; upstream site dead (http://wiki-bsse.ethz.ch/)
libvigraimpex: hdf5			binnmu OK
mapsembler2: hdf5			binnmu OK
med-fichier: hdf5			patch provided via #841964
meep: hdf5				binnmu OK
meep-lam4: hdf5				binnmu OK
meep-mpi-default: hdf5			binnmu OK
meep-mpich2: hdf5			binnmu OK
meep-openmpi: hdf5			binnmu OK
mpb: hdf5				binnmu OK
ncbi-vdb: hdf5				binnmu OK
netcdf: hdf5				binnmu OK
nexus: hdf5				binnmu OK
octave: hdf5				binnmu OK
opengm: hdf5				binnmu OK
pbseqlib: hdf5				binnmu OK
pytables: hdf5				KO - doesn't support hdf5-1.10 yet
r-cran-hdf5: hdf5			binnmu OK
seer: hdf5				binnmu OK
shark: hdf5				binnmu OK
shogun: hdf5				FTBFS unrelated to hdf5 - not in testing - #809290
silo-llnl: hdf5				binnmu OK
slurm-llnl: hdf5			binnmu OK
stimfit: hdf5				binnmu OK
tessa: hdf5				FTBFS unrelated to hdf5 - not in testing - #817690
trilinos: hdf5				binnmu OK
xdmf: hdf5				binnmu OK
yorick-hdf5: hdf5			KO Yorick doesn't support 64bits integers (hid_t)
===[ Dependency level 2 ]=====
adios: hdf5 netcdf			binnmu OK
aster: hdf5 med-fichier			FTBFS unrelated to hdf5 - not in testing - #837915
blasr: hdf5 pbseqlib			binnmu OK
cmor: hdf5 netcdf			binnmu OK
code-saturne: hdf5 libcgns med-fichier	binnmu OK
comet-ms: libmstoolkit			binnmu OK
deal.ii: hdf5 netcdf trilinos		BD uninstallable - not in testing
gdal: hdf5 netcdf			binnmu OK
grads: hdf5 netcdf			binnmu OK
grib-api: hdf5 netcdf			binnmu OK
labplot: hdf5 netcdf			binnmu OK
libminc: hdf5 netcdf			patch provided via #841970
mathgl: hdf5 octave			binnmu OK
nco: netcdf				binnmu OK
ncview: netcdf				binnmu OK
netcdf4-python: hdf5 netcdf		binnmu OK
octave-netcdf: netcdf			binnmu OK
ovito: hdf5 netcdf			binnmu OK
paraview: hdf5 netcdf xdmf		binnmu OK
psi4: chemps2 hdf5			binnmu OK
pygpiv: hdf5 libgpiv			binnmu OK
python-shogun: hdf5 shogun		binnmu OK
r-cran-ncdf4: netcdf			binnmu OK
ruby-hdfeos5: hdf-eos5 hdf5		binnmu OK
ruby-netcdf: netcdf			binnmu OK
scilab: hdf5 libmatio			patch provided via #841975 + need ocaml binnmu #841938
vips: libmatio				binnmu OK
===[ Dependency level 3 ]=====
gmt: gdal netcdf			binnmu OK
gnudatalanguage: grib-api hdf5 netcdf	patch provided via #841971
grass: gdal netcdf			binnmu OK
insighttoolkit4: hdf5 libminc		IN PROGRESS
magics++: grib-api hdf5 netcdf		binnmu OK
minc-tools: hdf5 libminc netcdf		patch provided via #841972
ncl: gdal hdf-eos5 hdf5 netcdf		binnmu OK
pdal: gdal hdf5				binnmu OK
syrthes: code-saturne hdf5 med-fichier	binnmu OK
vtk6: gdal hdf5 netcdf			binnmu OK
===[ Dependency level 4 ]=====
ants: hdf5 insighttoolkit4		IN PROGRESS
cdo: grib-api hdf5 magics++ netcdf	binnmu OK
dolfin: hdf5 vtk6			binnmu OK
ifrit: vtk6				binnmu OK
metview: grib-api hdf5 magics++ netcdf	binnmu OK
mia: hdf5 vtk6				binnmu OK
odin: hdf5 ismrmrd vtk6			FTBFS unrelated to hdf5 - not in testing - #835746
openmeeg: libmatio vtk6			binnmu OK


Thanks in advance,

_g.

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--- End Message ---
--- Begin Message --- 
On 26/10/16 18:46, Gilles Filippini wrote:
> Package: release.debian.org
> Severity: normal
> User: release.debian.org@packages.debian.org
> Usertags: transition
> 
> Hi Release Team,
> 
> I hereby request a transition slot for hdf5 1.10 currently in experimental. This release ships major changes and has its soname bumped from 10 to 100.

This is finished (in testing).

Cheers,
Emilio

--- End Message ---
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